Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_019408.1
Length=223720
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 163 4e-35
>seq63210
Length=11074
Score = 163 bits (180), Expect = 4e-35
Identities = 170/222 (77%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 140272 GCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTCGGGCAGGTCCGAGG 140331
|||||| ||| |||||||| || ||| ||| ||| | ||||||||| |
Sbjct 7022 GCGGGATGGCCCGCTCGATCTGCTCGCGGAGCCCCTGCAGGTCGGTGGGCAGGTC---GC 6966
Query 140332 CCTTC---AGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCCG 140388
||||| | | ||| || || || |||||||||||||||||||||||||| |||||||
Sbjct 6965 CCTTCGTGAACTGGGTCCGGACCGCGATCATGCCGCAGCCGATGTCCACGCCGACGGCCG 6906
Query 140389 CCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATGT 140448
|||| ||||| ||||| ||||||||| |||||||||||||| | ||||| ||| | ||
Sbjct 6905 CCGGCATGATCGCGCCGAGGGTCGGGATGACCGAGCCCACGGTGGCGCCGAGGCCGAGGT 6846
Query 140449 GGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCA 140490
|| |||||||||| ||||||| |||| | | ||||||||
Sbjct 6845 GGGCGTCCGGCATGAGGGCCAGGTGCGGGAACACGAACGGCA 6804
Score = 131 bits (144), Expect = 2e-25
Identities = 372/555 (67%), Gaps = 34/555 (6%)
Strand=Plus/Minus
Query 139583 CCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGC--GTTGCCCTTGCCGCGCACG 139640
|||||| || ||||||| |||| || ||| |||| |||||| ||| |||
Sbjct 7678 CCGCCCGGCACCGTGCGGCGACGACTCGAGCGA--CGGCTTGTTGCCGAGGCCCTCGACG 7621
Query 139641 ATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTCTGAGCCGAC 139700
| ||| ||| || |||||||| |||||||| | |||| ||| || || |||
Sbjct 7620 ACGTACGACGCGGTGCCCATCGACCCGGGGATCAGGCCGGCCTGCCCCGCCTTCGCCTGG 7561
Query 139701 ACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCCTTCTGGACGTAG 139760
| ||||||||| |||| ||| | || ||| | |||| ||| ||| | ||
Sbjct 7560 ATCGCGCCCTTCCGGGACACCCACACGGACTTCCCCCAGTGCGTCTCGCGCTGCGTGAAG 7501
Query 139761 TTGTGGTGGCAGTTCACCGCTTC-CTTGTCCGTCTTGAAGGGCGG---CAGGCCCGAGGC 139816
|||||||||||||| | ||| || | | || || ||||| || | || |
Sbjct 7500 TTGTGGTGGCAGTTGA----TTCGCTCGAGCTCCTCGACGGGCGCGTCCATGACCT---C 7448
Query 139817 GCGCATGGCGTCCAG--GACCCGGATCATCATCATCTCGCGGTTGATCCGCGCGAAGTCC 139874
||||| || || | ||||||| ||||||| ||||||||||| ||||||||| |
Sbjct 7447 GCGCA--GCTGCCGGACGACCCGGTCCATCATCTCCTCGCGGTTGAGGAGCGCGAAGTGC 7390
Query 139875 TGACCCCAGGCGACGGCTT--CCACGTAGTCGTAGAATTCCGGCTCGCCTTCCGAC-AGC 139931
|| |||| || | ||| | | ||| || ||| || ||| ||| || ||| ||
Sbjct 7389 TGCGCCCAC-CG-CAGCTCGGCGATGTACCGGTCGAACTCGGGCGTGCCCTC-GACGAGG 7333
Query 139932 CACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCATCATCTCCTTGGCC 139991
|||| ||||| ||| || ||| || | || ||| |||| || ||| ||
Sbjct 7332 TACGCCAGGTCGGGGTCCGGCAGCTC--GATCCACCAC-CGCTCCATCGCCTTCTTCGCG 7276
Query 139992 TTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATC 140051
|| |||| || |||| |||||||||||||||| || || ||||| || | |
Sbjct 7275 ATCGTGATGTGCCGCTGGGCGATCTTGTTGCCGACGCCGCGTGACCCGGAGTGCAGGAAC 7216
Query 140052 ACCCAGACGCGCTGGTCCT---CGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCC 140108
| |||||| |||||||| |||||||| |||||||||||||||||||||| ||
Sbjct 7215 AGCCAGAC---CTGGTCCTGCTCGTCGAGGGAGACCTCGATGAAGTGGTTGCCCGACCCG 7159
Query 140109 AGCGTGCCCAGTTGG 140123
||||| || || |||
Sbjct 7158 AGCGTCCCGAGCTGG 7144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715206385459200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |