Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq63210 163 4e-35 >seq63210 Length=11074 Score = 163 bits (180), Expect = 4e-35 Identities = 170/222 (77%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 140272 GCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTCGGGCAGGTCCGAGG 140331 |||||| ||| |||||||| || ||| ||| ||| | ||||||||| | Sbjct 7022 GCGGGATGGCCCGCTCGATCTGCTCGCGGAGCCCCTGCAGGTCGGTGGGCAGGTC---GC 6966 Query 140332 CCTTC---AGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCCG 140388 ||||| | | ||| || || || |||||||||||||||||||||||||| ||||||| Sbjct 6965 CCTTCGTGAACTGGGTCCGGACCGCGATCATGCCGCAGCCGATGTCCACGCCGACGGCCG 6906 Query 140389 CCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATGT 140448 |||| ||||| ||||| ||||||||| |||||||||||||| | ||||| ||| | || Sbjct 6905 CCGGCATGATCGCGCCGAGGGTCGGGATGACCGAGCCCACGGTGGCGCCGAGGCCGAGGT 6846 Query 140449 GGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCA 140490 || |||||||||| ||||||| |||| | | |||||||| Sbjct 6845 GGGCGTCCGGCATGAGGGCCAGGTGCGGGAACACGAACGGCA 6804 Score = 131 bits (144), Expect = 2e-25 Identities = 372/555 (67%), Gaps = 34/555 (6%) Strand=Plus/Minus Query 139583 CCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGC--GTTGCCCTTGCCGCGCACG 139640 |||||| || ||||||| |||| || ||| |||| |||||| ||| ||| Sbjct 7678 CCGCCCGGCACCGTGCGGCGACGACTCGAGCGA--CGGCTTGTTGCCGAGGCCCTCGACG 7621 Query 139641 ATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTCTGAGCCGAC 139700 | ||| ||| || |||||||| |||||||| | |||| ||| || || ||| Sbjct 7620 ACGTACGACGCGGTGCCCATCGACCCGGGGATCAGGCCGGCCTGCCCCGCCTTCGCCTGG 7561 Query 139701 ACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCCTTCTGGACGTAG 139760 | ||||||||| |||| ||| | || ||| | |||| ||| ||| | || Sbjct 7560 ATCGCGCCCTTCCGGGACACCCACACGGACTTCCCCCAGTGCGTCTCGCGCTGCGTGAAG 7501 Query 139761 TTGTGGTGGCAGTTCACCGCTTC-CTTGTCCGTCTTGAAGGGCGG---CAGGCCCGAGGC 139816 |||||||||||||| | ||| || | | || || ||||| || | || | Sbjct 7500 TTGTGGTGGCAGTTGA----TTCGCTCGAGCTCCTCGACGGGCGCGTCCATGACCT---C 7448 Query 139817 GCGCATGGCGTCCAG--GACCCGGATCATCATCATCTCGCGGTTGATCCGCGCGAAGTCC 139874 ||||| || || | ||||||| ||||||| ||||||||||| ||||||||| | Sbjct 7447 GCGCA--GCTGCCGGACGACCCGGTCCATCATCTCCTCGCGGTTGAGGAGCGCGAAGTGC 7390 Query 139875 TGACCCCAGGCGACGGCTT--CCACGTAGTCGTAGAATTCCGGCTCGCCTTCCGAC-AGC 139931 || |||| || | ||| | | ||| || ||| || ||| ||| || ||| || Sbjct 7389 TGCGCCCAC-CG-CAGCTCGGCGATGTACCGGTCGAACTCGGGCGTGCCCTC-GACGAGG 7333 Query 139932 CACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCATCATCTCCTTGGCC 139991 |||| ||||| ||| || ||| || | || ||| |||| || ||| || Sbjct 7332 TACGCCAGGTCGGGGTCCGGCAGCTC--GATCCACCAC-CGCTCCATCGCCTTCTTCGCG 7276 Query 139992 TTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATC 140051 || |||| || |||| |||||||||||||||| || || ||||| || | | Sbjct 7275 ATCGTGATGTGCCGCTGGGCGATCTTGTTGCCGACGCCGCGTGACCCGGAGTGCAGGAAC 7216 Query 140052 ACCCAGACGCGCTGGTCCT---CGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCC 140108 | |||||| |||||||| |||||||| |||||||||||||||||||||| || Sbjct 7215 AGCCAGAC---CTGGTCCTGCTCGTCGAGGGAGACCTCGATGAAGTGGTTGCCCGACCCG 7159 Query 140109 AGCGTGCCCAGTTGG 140123 ||||| || || ||| Sbjct 7158 AGCGTCCCGAGCTGG 7144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715206385459200