Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_019410.1
Length=221828
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 129 8e-25
seq63454 109 8e-19
>seq63210
Length=11074
Score = 129 bits (142), Expect = 8e-25
Identities = 319/470 (68%), Gaps = 18/470 (4%)
Strand=Plus/Minus
Query 137462 ACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCC 137521
|||| ||| ||| || |||||||| |||||||| | ||| ||| || || ||||
Sbjct 7623 ACGACGTACGACGCGGTGCCCATCGACCCGGGGATCAGGCCGGCCTGCCCCGCCTTCGCC 7564
Query 137522 GACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACG 137581
| ||||||||| |||| ||| | || ||| | |||| || ||| |
Sbjct 7563 TGGATCGCGCCCTTCCGGGACACCCACACGGACTTCCCCCAGTGCGTCTCGCGCTGCGTG 7504
Query 137582 TAGTTGTGGTGGCAGTTCACCGCTTC-CTTGTCCGTCTTGAACGGCGGCAGGCCCGACGC 137640
|||||||||||||||| | ||| || | | || || |||| | | ||| |
Sbjct 7503 AAGTTGTGGTGGCAGTTGA----TTCGCTCGAGCTCCTCGACGGGCG-CGTCCATGAC-C 7450
Query 137641 CCGCATGGCCTCCAG--GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCC 137698
||| || || | ||||||| |||||||| ||||||||||| ||||||||| |
Sbjct 7449 TCGCGCAGCTGCCGGACGACCCGGTCCATCATCTCCTCGCGGTTGAGGAGCGCGAAGTGC 7390
Query 137699 TGGCCCCAGGCGACGGCTT--CCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCC 137756
|| |||| || | ||| | | ||| || |||||| ||| ||| ||| |||
Sbjct 7389 TGCGCCCAC-CG-CAGCTCGGCGATGTACCGGTCGAACTCGGGCGTGCCCTCGACGAGGT 7332
Query 137757 AAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATCATCTCCTTGGCCT 137816
| || ||||| |||| || ||| | || ||| || | |||| || ||| ||
Sbjct 7331 ACGCCAGGTCGGGGTCCGGCAGCTCGATCCAC-CACCGCTC--CATCGCCTTCTTCGCGA 7275
Query 137817 TCTCGATGAAGATGC-GGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATC 137875
|| |||| | || || |||| |||||||||||||||| || || ||||| || | |
Sbjct 7274 TCGTGATGT-GCCGCTGGGCGATCTTGTTGCCGACGCCGCGTGACCCGGAGTGCAGGAAC 7216
Query 137876 ACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 137925
| |||||| | | | |||||||||| ||||||||||||||||||||||
Sbjct 7215 AGCCAGACCTGGTCCTGCTCGTCGAGGGAGACCTCGATGAAGTGGTTGCC 7166
Score = 91.5 bits (100), Expect = 2e-13
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 138166 GGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGC 138225
||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 6952 GGTCCGGACCGCGATCATGCCGCAGCCGATGTCCACGCCGACGGCCGCCGGCATGATCGC 6893
Query 138226 GCC 138228
|||
Sbjct 6892 GCC 6890
>seq63454
Length=19053
Score = 109 bits (120), Expect = 8e-19
Identities = 168/237 (71%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 54421 CTGGGCTTCCTGCCCGGCAAGCTGGAAGCCAAGCTCGCCCCGTGGCTCGTCCCGGTCATC 54480
|| || ||||||||||||| |||| | |||| ||| ||||| ||| |||| || |
Sbjct 7298 CTCGGGTTCCTGCCCGGCACGCTGACGGACAAGATCGACCCGTACCTCCGCCCGCTCTAC 7357
Query 54481 GAGGGCGTCAAGGCCGAGATGAACG-CCCAGACCTACACTC--AGTTGCAGGAAGCCGGC 54537
|| | |||| |||||||| | ||| || || | | || | | || ||||||
Sbjct 7358 GACGCGCTCAA---CGAGATGATGGACCCCGAGCTGGTCCCGAAGCTCCTGGCCGCCGGC 7414
Query 54538 AAGATCGAGTTCGCCTCGTTCGAGCACATGCGCGGCCGGACCTTCGCCGAGTGCTGCGTC 54597
| | ||||| ||||| || | | | |||||||||||||||| | ||| | | ||||
Sbjct 7415 ACGGTCGAGGTCGCCCCGCTGGCGTACATGCGCGGCCGGACGCTGAACGACTCGTTCGTC 7474
Query 54598 CTCCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTGAAGATGGTCCTGACCCGC 54654
|||||||||||||||||||| || | || | |||||||| ||||||| |||
Sbjct 7475 GTCCTCGACGAGGCGCAGAACACCACGCCCGAGCAGATGAAGATGTTCCTGACGCGC 7531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 709156803550720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |