Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq63210 129 8e-25 seq63454 109 8e-19 >seq63210 Length=11074 Score = 129 bits (142), Expect = 8e-25 Identities = 319/470 (68%), Gaps = 18/470 (4%) Strand=Plus/Minus Query 137462 ACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCC 137521 |||| ||| ||| || |||||||| |||||||| | ||| ||| || || |||| Sbjct 7623 ACGACGTACGACGCGGTGCCCATCGACCCGGGGATCAGGCCGGCCTGCCCCGCCTTCGCC 7564 Query 137522 GACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACG 137581 | ||||||||| |||| ||| | || ||| | |||| || ||| | Sbjct 7563 TGGATCGCGCCCTTCCGGGACACCCACACGGACTTCCCCCAGTGCGTCTCGCGCTGCGTG 7504 Query 137582 TAGTTGTGGTGGCAGTTCACCGCTTC-CTTGTCCGTCTTGAACGGCGGCAGGCCCGACGC 137640 |||||||||||||||| | ||| || | | || || |||| | | ||| | Sbjct 7503 AAGTTGTGGTGGCAGTTGA----TTCGCTCGAGCTCCTCGACGGGCG-CGTCCATGAC-C 7450 Query 137641 CCGCATGGCCTCCAG--GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCC 137698 ||| || || | ||||||| |||||||| ||||||||||| ||||||||| | Sbjct 7449 TCGCGCAGCTGCCGGACGACCCGGTCCATCATCTCCTCGCGGTTGAGGAGCGCGAAGTGC 7390 Query 137699 TGGCCCCAGGCGACGGCTT--CCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCC 137756 || |||| || | ||| | | ||| || |||||| ||| ||| ||| ||| Sbjct 7389 TGCGCCCAC-CG-CAGCTCGGCGATGTACCGGTCGAACTCGGGCGTGCCCTCGACGAGGT 7332 Query 137757 AAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATCATCTCCTTGGCCT 137816 | || ||||| |||| || ||| | || ||| || | |||| || ||| || Sbjct 7331 ACGCCAGGTCGGGGTCCGGCAGCTCGATCCAC-CACCGCTC--CATCGCCTTCTTCGCGA 7275 Query 137817 TCTCGATGAAGATGC-GGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATC 137875 || |||| | || || |||| |||||||||||||||| || || ||||| || | | Sbjct 7274 TCGTGATGT-GCCGCTGGGCGATCTTGTTGCCGACGCCGCGTGACCCGGAGTGCAGGAAC 7216 Query 137876 ACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 137925 | |||||| | | | |||||||||| |||||||||||||||||||||| Sbjct 7215 AGCCAGACCTGGTCCTGCTCGTCGAGGGAGACCTCGATGAAGTGGTTGCC 7166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 138166 GGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGC 138225 ||| |||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 6952 GGTCCGGACCGCGATCATGCCGCAGCCGATGTCCACGCCGACGGCCGCCGGCATGATCGC 6893 Query 138226 GCC 138228 ||| Sbjct 6892 GCC 6890 >seq63454 Length=19053 Score = 109 bits (120), Expect = 8e-19 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 54421 CTGGGCTTCCTGCCCGGCAAGCTGGAAGCCAAGCTCGCCCCGTGGCTCGTCCCGGTCATC 54480 || || ||||||||||||| |||| | |||| ||| ||||| ||| |||| || | Sbjct 7298 CTCGGGTTCCTGCCCGGCACGCTGACGGACAAGATCGACCCGTACCTCCGCCCGCTCTAC 7357 Query 54481 GAGGGCGTCAAGGCCGAGATGAACG-CCCAGACCTACACTC--AGTTGCAGGAAGCCGGC 54537 || | |||| |||||||| | ||| || || | | || | | || |||||| Sbjct 7358 GACGCGCTCAA---CGAGATGATGGACCCCGAGCTGGTCCCGAAGCTCCTGGCCGCCGGC 7414 Query 54538 AAGATCGAGTTCGCCTCGTTCGAGCACATGCGCGGCCGGACCTTCGCCGAGTGCTGCGTC 54597 | | ||||| ||||| || | | | |||||||||||||||| | ||| | | |||| Sbjct 7415 ACGGTCGAGGTCGCCCCGCTGGCGTACATGCGCGGCCGGACGCTGAACGACTCGTTCGTC 7474 Query 54598 CTCCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTGAAGATGGTCCTGACCCGC 54654 |||||||||||||||||||| || | || | |||||||| ||||||| ||| Sbjct 7475 GTCCTCGACGAGGCGCAGAACACCACGCCCGAGCAGATGAAGATGTTCCTGACGCGC 7531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709156803550720