Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_019411.1
Length=219216
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 134 2e-26
seq63454 95.1 2e-14
>seq63210
Length=11074
Score = 134 bits (148), Expect = 2e-26
Identities = 324/474 (68%), Gaps = 26/474 (5%)
Strand=Plus/Minus
Query 136226 ACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCC 136285
|||| ||| ||| || |||||||| |||||||| | ||| ||| || || ||||
Sbjct 7623 ACGACGTACGACGCGGTGCCCATCGACCCGGGGATCAGGCCGGCCTGCCCCGCCTTCGCC 7564
Query 136286 GACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACG 136345
| ||||||||| |||| ||| | || ||| | |||| || ||| |
Sbjct 7563 TGGATCGCGCCCTTCCGGGACACCCACACGGACTTCCCCCAGTGCGTCTCGCGCTGCGTG 7504
Query 136346 TAGTTGTGGTGGCAGTTCACCGCTTC-CTTGTCCGTCTTGAACGGCGGCAGGCCCGACGC 136404
|||||||||||||||| | ||| || | | || || |||| | | ||| |
Sbjct 7503 AAGTTGTGGTGGCAGTTGA----TTCGCTCGAGCTCCTCGACGGGCG-CGTCCATGAC-C 7450
Query 136405 TCGCATGGCCTCCAG--GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCC 136462
|||| || || | ||||||| |||||||| ||||||||||| ||||||||| |
Sbjct 7449 TCGCGCAGCTGCCGGACGACCCGGTCCATCATCTCCTCGCGGTTGAGGAGCGCGAAGTGC 7390
Query 136463 TGGCCCCAGGCGACGGCTT--CCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCC 136520
|| |||| || | ||| | | ||| || |||||| ||| ||| ||| |||
Sbjct 7389 TGCGCCCAC-CG-CAGCTCGGCGATGTACCGGTCGAACTCGGGCGTGCCCTCGACGAGGT 7332
Query 136521 AAGCAAGGTCCTTGTCCAGCGGCTTACGC-CCGTCACGGCGCAGCATCATCTCCTTGGCC 136579
| || ||||| |||| || ||| || || ||| || | |||| || ||| ||
Sbjct 7331 ACGCCAGGTCGGGGTCCGGCAGCT--CGATCCACCACCGCTC--CATCGCCTTCTTCGCG 7276
Query 136580 TTCTCGATGAAGATGC-GGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCAT 136638
|| |||| | || || |||| |||||||||||||||| || || ||||| || |
Sbjct 7275 ATCGTGATGT-GCCGCTGGGCGATCTTGTTGCCGACGCCGCGTGACCCGGAGTGCAGGAA 7217
Query 136639 CACCCAGACGCGCTGGTCCT---CGTCGAGGCAGACCTCGATGAAGTGGTTGCC 136689
|| |||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 7216 CAGCCAGAC---CTGGTCCTGCTCGTCGAGGGAGACCTCGATGAAGTGGTTGCC 7166
Score = 91.5 bits (100), Expect = 2e-13
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 136930 GGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGC 136989
||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 6952 GGTCCGGACCGCGATCATGCCGCAGCCGATGTCCACGCCGACGGCCGCCGGCATGATCGC 6893
Query 136990 GCC 136992
|||
Sbjct 6892 GCC 6890
>seq63454
Length=19053
Score = 95.1 bits (104), Expect = 2e-14
Identities = 165/237 (70%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 53570 CTGGGCTTCCTGCCCGGCAAGCTGGAAGCCAAGCTCGCCCCGTGGCTCGTCCCGGTGATC 53629
|| || ||||||||||||| |||| | |||| ||| ||||| ||| |||| | |
Sbjct 7298 CTCGGGTTCCTGCCCGGCACGCTGACGGACAAGATCGACCCGTACCTCCGCCCGCTCTAC 7357
Query 53630 GAGGGCGTCAAGGCTGAAATGAACG-CCCAGACCTA--CACGCAGTTGCAGGAGGCCGGC 53686
|| | |||| | | |||| | ||| || || | || || | | || ||||||
Sbjct 7358 GACGCGCTCAACG---AGATGATGGACCCCGAGCTGGTCCCGAAGCTCCTGGCCGCCGGC 7414
Query 53687 AAGATCGAGTTCGCCTCGTTCGAGCACATGCGGGGCCGGACCTTCGCCGAGTGCTGCGTC 53746
| | ||||| ||||| || | | | ||||||| |||||||| | ||| | | ||||
Sbjct 7415 ACGGTCGAGGTCGCCCCGCTGGCGTACATGCGCGGCCGGACGCTGAACGACTCGTTCGTC 7474
Query 53747 CTCCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTGAAGATGGTCCTGACCCGC 53803
|||||||||||||||||||| || | || | |||||||| ||||||| |||
Sbjct 7475 GTCCTCGACGAGGCGCAGAACACCACGCCCGAGCAGATGAAGATGTTCCTGACGCGC 7531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 700805055165440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |