Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq63210 134 2e-26 seq63454 95.1 2e-14 >seq63210 Length=11074 Score = 134 bits (148), Expect = 2e-26 Identities = 324/474 (68%), Gaps = 26/474 (5%) Strand=Plus/Minus Query 136226 ACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCC 136285 |||| ||| ||| || |||||||| |||||||| | ||| ||| || || |||| Sbjct 7623 ACGACGTACGACGCGGTGCCCATCGACCCGGGGATCAGGCCGGCCTGCCCCGCCTTCGCC 7564 Query 136286 GACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACG 136345 | ||||||||| |||| ||| | || ||| | |||| || ||| | Sbjct 7563 TGGATCGCGCCCTTCCGGGACACCCACACGGACTTCCCCCAGTGCGTCTCGCGCTGCGTG 7504 Query 136346 TAGTTGTGGTGGCAGTTCACCGCTTC-CTTGTCCGTCTTGAACGGCGGCAGGCCCGACGC 136404 |||||||||||||||| | ||| || | | || || |||| | | ||| | Sbjct 7503 AAGTTGTGGTGGCAGTTGA----TTCGCTCGAGCTCCTCGACGGGCG-CGTCCATGAC-C 7450 Query 136405 TCGCATGGCCTCCAG--GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCC 136462 |||| || || | ||||||| |||||||| ||||||||||| ||||||||| | Sbjct 7449 TCGCGCAGCTGCCGGACGACCCGGTCCATCATCTCCTCGCGGTTGAGGAGCGCGAAGTGC 7390 Query 136463 TGGCCCCAGGCGACGGCTT--CCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCC 136520 || |||| || | ||| | | ||| || |||||| ||| ||| ||| ||| Sbjct 7389 TGCGCCCAC-CG-CAGCTCGGCGATGTACCGGTCGAACTCGGGCGTGCCCTCGACGAGGT 7332 Query 136521 AAGCAAGGTCCTTGTCCAGCGGCTTACGC-CCGTCACGGCGCAGCATCATCTCCTTGGCC 136579 | || ||||| |||| || ||| || || ||| || | |||| || ||| || Sbjct 7331 ACGCCAGGTCGGGGTCCGGCAGCT--CGATCCACCACCGCTC--CATCGCCTTCTTCGCG 7276 Query 136580 TTCTCGATGAAGATGC-GGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCAT 136638 || |||| | || || |||| |||||||||||||||| || || ||||| || | Sbjct 7275 ATCGTGATGT-GCCGCTGGGCGATCTTGTTGCCGACGCCGCGTGACCCGGAGTGCAGGAA 7217 Query 136639 CACCCAGACGCGCTGGTCCT---CGTCGAGGCAGACCTCGATGAAGTGGTTGCC 136689 || |||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 7216 CAGCCAGAC---CTGGTCCTGCTCGTCGAGGGAGACCTCGATGAAGTGGTTGCC 7166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 136930 GGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGC 136989 ||| |||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 6952 GGTCCGGACCGCGATCATGCCGCAGCCGATGTCCACGCCGACGGCCGCCGGCATGATCGC 6893 Query 136990 GCC 136992 ||| Sbjct 6892 GCC 6890 >seq63454 Length=19053 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 53570 CTGGGCTTCCTGCCCGGCAAGCTGGAAGCCAAGCTCGCCCCGTGGCTCGTCCCGGTGATC 53629 || || ||||||||||||| |||| | |||| ||| ||||| ||| |||| | | Sbjct 7298 CTCGGGTTCCTGCCCGGCACGCTGACGGACAAGATCGACCCGTACCTCCGCCCGCTCTAC 7357 Query 53630 GAGGGCGTCAAGGCTGAAATGAACG-CCCAGACCTA--CACGCAGTTGCAGGAGGCCGGC 53686 || | |||| | | |||| | ||| || || | || || | | || |||||| Sbjct 7358 GACGCGCTCAACG---AGATGATGGACCCCGAGCTGGTCCCGAAGCTCCTGGCCGCCGGC 7414 Query 53687 AAGATCGAGTTCGCCTCGTTCGAGCACATGCGGGGCCGGACCTTCGCCGAGTGCTGCGTC 53746 | | ||||| ||||| || | | | ||||||| |||||||| | ||| | | |||| Sbjct 7415 ACGGTCGAGGTCGCCCCGCTGGCGTACATGCGCGGCCGGACGCTGAACGACTCGTTCGTC 7474 Query 53747 CTCCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTGAAGATGGTCCTGACCCGC 53803 |||||||||||||||||||| || | || | |||||||| ||||||| ||| Sbjct 7475 GTCCTCGACGAGGCGCAGAACACCACGCCCGAGCAGATGAAGATGTTCCTGACGCGC 7531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700805055165440