Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq63531 138 4e-28 >seq63531 Length=42858 Score = 138 bits (152), Expect = 4e-28 Identities = 463/715 (65%), Gaps = 13/715 (2%) Strand=Plus/Minus Query 45522 TGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAA 45581 ||||||| ||||| |||| || || | | || ||||||||| | ||||| || Sbjct 32406 TGTTCGGTGCGCAGCTCCGCTACGACCTGTCGAAGGGCTTCCCGCTCATCACGACCAAGC 32347 Query 45582 AGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATG 45641 |||| || ||| || || || ||||| ||||| | ||||| || | Sbjct 32346 GCGTGCACTTCAAGTCGGTCGCGTACGAGCTGCTGTGGTTCCTCCGCGGCGACGGCAACG 32287 Query 45642 TTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCG 45701 |||| |||||||| | || || || ||| |||||||||| || || |||||| Sbjct 32286 CCCGCTGGCTGCAGGAGCACGGCGTCCGCATCTGGAACGAGTGGGCGGACGAGGACGGCG 32227 Query 45702 ATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGG 45761 | |||||||| | ||||||| ||| ||||| |||||| | | | |||| | | Sbjct 32226 ACCTCGGCCCGGTGTACGGCGTGCAGTGGCGTTCGTGGCC-GACCCCGTCGGGCGAGCAC 32168 Query 45762 -TCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTTG 45820 ||||||| || || |||| | || | ||| | ||||||| |||| || ||| | Sbjct 32167 ATCGACCAGATCGCCCAGGTCATCGAGCAGATCCGGACCAACCCGGACTCCCGCCGGCTC 32108 Query 45821 CTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTAC 45880 | || ||||||||||| || || || || ||| | || |||| || || | Sbjct 32107 ATCGTCTCGGCGTGGAACGTCGCCGAGGTGCCCGAGATGGCGCTGGCCCCGTGCCA---C 32051 Query 45881 GC---CTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCT 45937 || ||| ||||| ||||| | ||| | | || ||| | | | ||||| Sbjct 32050 GCGTTCTTCCAGTTCCACGTCAACGACGGCAAGCTCTCGTGCCAGCTGTACCAGCGGAGC 31991 Query 45938 GTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATG 45997 | || | || || || | ||||| |||||||| || |||||| |||| || ||| Sbjct 31990 GCGGACATGTTCCTCGGTGTCCCGTTCAACATCGCCTCGTACGCGCTGCTGACCCACATG 31931 Query 45998 GTTGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCAT 46057 | || || || ||||| |||||||| || | | ||||| |||||| ||| Sbjct 31930 ATCGCGGCGCAGACCGGGCTCGAGGTCGGCGACTTCGTGTGGACCGGTGGCGACTGCCAC 31871 Query 46058 TTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTG 46117 | ||| | || || | || || | | ||||||||||||| |||| | |||| Sbjct 31870 GTCTACGACAACCACGTCGAGCAGGTCGAGGAGCAGCTGACGCGCACGCCGTACGCGCTC 31811 Query 46118 CCGAAGCTCGTGATCAAACGGAAGCCGC-CGTCTATCTTTGACTATGAATACGAGGATTT 46176 |||| ||||| | | || | |||| || ||| ||||| || |||||||| || Sbjct 31810 CCGACGCTCGAGCT----CGCACCCCGCGACTCGATCGACGACTACGAGTACGAGGACTT 31755 Query 46177 TGAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGA 46231 | |||||||| ||| ||||||||||| ||||| | || |||| ||| Sbjct 31754 CACCGTCGTCGGCTACCACCACCACCCGGCGATCAAGGCCGCGGTCGCCGTCTGA 31700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157631139120096