Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq32996 89.7 4e-13
seq25243 89.7 4e-13
>seq32996
Length=3898
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||||||||| || ||||| || || || || ||||| || || ||||
Sbjct 1544 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1485
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || | || ||| ||| ||||| ||||| | || ||| ||
Sbjct 1484 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 1425
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|||||| | |||||||| || || ||| | || ||| | || |||| ||||| |||
Sbjct 1424 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 1365
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
||||| |||||||| || ||||||
Sbjct 1364 ATTCAGAAAGAATCAACCCTGCAC 1341
>seq25243
Length=7086
Score = 89.7 bits (98), Expect = 4e-13
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727
||||| |||||||| || ||||| || ||||||||||||||| | ||| |||| |||
Sbjct 5291 GATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGAAGATGGTCGAACCCTGGCTGAT 5350
Query 28728 TATAACATTCAAAAAGAATCTACTCTGCA 28756
|| |||||||| |||||||| ||||| ||
Sbjct 5351 TACAACATTCAGAAAGAATCAACTCTTCA 5379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425074726288656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |