Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq32996 89.7 4e-13 seq25243 89.7 4e-13 >seq32996 Length=3898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||||| || || || || ||||| || || |||| Sbjct 1544 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1485 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || ||| ||| ||||| ||||| | || ||| || Sbjct 1484 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 1425 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || || ||| | || ||| | || |||| ||||| ||| Sbjct 1424 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 1365 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| |||||||| || |||||| Sbjct 1364 ATTCAGAAAGAATCAACCCTGCAC 1341 >seq25243 Length=7086 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||||| || ||||| || ||||||||||||||| | ||| |||| ||| Sbjct 5291 GATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGAAGATGGTCGAACCCTGGCTGAT 5350 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCA 28756 || |||||||| |||||||| ||||| || Sbjct 5351 TACAACATTCAGAAAGAATCAACTCTTCA 5379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425074726288656