Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq63299 107 2e-18 seq7277 100 3e-16 seq11918 93.3 5e-14 seq6171 89.7 6e-13 seq34693 82.4 9e-11 >seq63299 Length=13169 Score = 107 bits (118), Expect = 2e-18 Identities = 278/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | || || ||| | ||| |||| ||||||| | || | || || || || Sbjct 6493 GAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTGGGCGCTCGTATTCCA 6552 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| || ||||| || || ||| | || || || || Sbjct 6553 AAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATT 6612 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409 || |||||| | ||| ||||| || || | || | | || | || || |||||||| Sbjct 6613 GCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGCTCAGAATTCGTTGAGATGTT 6671 Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACC 175469 ||||||||| || ||| | || || ||||| || | | ||| |||||| || Sbjct 6672 TGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCC 6731 Query 175470 ATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGT 175527 || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 6732 TTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGG 6791 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 | | || |||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 6792 AGG--AGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGT 6849 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 6850 TTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 6908 >seq7277 Length=17119 Score = 100 bits (110), Expect = 3e-16 Identities = 193/285 (68%), Gaps = 20/285 (7%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || |||||||| | || |||| | || ||||| | ||| ||||| Sbjct 13879 CCAGGTACTGGGAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTT 13938 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || ||| Sbjct 13939 TTCTCTTGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 13998 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | ||| | ||||| | || |||| || || |||||||| || |||||||| Sbjct 13999 AGGGATTTGTTTGAGAAGGC----GAAATCTAAAGCGCCTTGTATTGTGTTTATTGATGA 14054 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGC------TGGTGGTATGCCAGCAAATGACGA 175544 ||||||||| ||||| | || | | || ||||||| | |||||| || Sbjct 14055 GATTGATGCTGTGGGAAGACAGAGAGGTGCAGGACTTGGTGGT------GGAAATGATGA 14108 Query 175545 GAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 |||||| || || |||||||| || | || || |||||||| || Sbjct 14109 GAGAGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTT 14153 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || |||||||| | || |||| | || |||||| | ||| ||||| Sbjct 15190 CCAGGTACTGGGAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAAGCTGGTGTACCATTT 15249 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || ||| Sbjct 15250 TTCTCTTGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 15309 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | ||| | ||||| | || |||| || || ||||| || || |||||||| Sbjct 15310 AGGGATTTGTTTGAGAAGGC----GAAATCGAAAGCGCCTTGTATAGTGTTTATTGATGA 15365 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 ||||||||| ||||| | ||| | | || || | | | | | |||||| ||||| Sbjct 15366 GATTGATGCTGTGGGAAGGCAGAGAGGTGCAGGACTTGGAGG--TGGAAATGATGAGAGG 15423 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || || || |||||||| || | || || |||||||| || Sbjct 15424 GAGCAGACTATTAATCAGCTCTTGACTGAAATGGATGGGTT 15464 >seq11918 Length=25867 Score = 93.3 bits (102), Expect = 5e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 75189 |||| ||| | || |||||||||| ||||||||||||| | | || || | || | | Sbjct 16809 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTCTTAAAGATT 16750 Query 75190 CGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCA 75249 | | || | | | |||| ||||| ||||| | ||| | || | | || ||||| Sbjct 16749 C-AGGGAAAGATTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGAATCCA 16691 Query 75250 CGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 75309 | || || ||||| |||||| | ||||||| | |||||| ||| | ||||| Sbjct 16690 CAAAGAGGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGCTGGTTCAC 16631 Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| | ||||| ||||| |||||||| || ||||| || || Sbjct 16630 TCATGCATCTCCAACACTCTTTAATGCTGGCACTCCAAGGCCTCA 16586 >seq6171 Length=36435 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCG-CTC 65069 || ||| |||| ||||||||||||||||| | | ||| || | || || | Sbjct 4748 CCTTGTGTTGAAAAGAAGGCGAAATGGGCCCT----TCGTTGGATCGATGGTTCCGAAAC 4803 Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||| |||||| | | || ||||| ||||| || || || |||||| ||| || Sbjct 4804 TTTCGCGGAGCGCTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTT 4863 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 ||| | || | ||||||||| || ||||| | ||||| || || |||||||||||| Sbjct 4864 CTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGA 4923 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | ||||| |||| || ||| | ||| || ||||| Sbjct 4924 GTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGC 4962 >seq34693 Length=17230 Score = 82.4 bits (90), Expect = 9e-11 Identities = 195/295 (66%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 175383 CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCT 175442 ||||| | || | || | |||||||||||||||||||| || || ||| | || | Sbjct 2253 CTCTGGCTCAGAGTTCATTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTTAGGGACTT 2194 Query 175443 CTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGT 175502 || | | || ||||| || || || | || |||||||| |||||||| || Sbjct 2193 ATTCAACAAGGCGAAACAAAATTCGCCTTGCATAATTTTTATTGATGAAATTGATGCAGT 2134 Query 175503 GGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAA 175562 || | |||| | | ||||| | || |||||| || ||||| || ||| | || Sbjct 2133 TGGGAGGCAAAGAGGAACTGGTATTGGAGGAGGAAATGATGAAAGAGAGCAGACACTGAA 2074 Query 175563 TCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGC 175622 ||||| || || || |||||||| ||| | | ||||| | | || ||||| || Sbjct 2073 CCAACTTCTTACTGAAATGGATGGTTTTACTGGTAACACTGGAGTCATTGTCATTGCTGC 2014 Query 175623 CACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 |||||| | || || |||||| | || | ||| | || || | |||||| Sbjct 2013 TACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTAGACCTGGAAGGTTTGAT 1959 Score = 82.4 bits (90), Expect = 9e-11 Identities = 236/363 (65%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || || || || || || ||| || || |||||| Sbjct 2789 CCAGGGACAGGGAAGACATTGCTAGCTAAGGCGATTGCCGGAGAAGCAGGGGTGCCATTC 2730 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||||| | || | || | |||||||||||||||||||| || || ||| Sbjct 2729 TTTTCTCTCTCTGGCTCAGAGTTCATTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTT 2670 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | || | || | | || ||||| || || || | || |||||||| ||| Sbjct 2669 AGGGACTTATTCAACAAGGCGAAACAAAATTCGCCTTGCATAATTTTTATTGATGAAATT 2610 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | |||| | | ||||| | || |||||| || ||||| || Sbjct 2609 GATGCAGTTGGGAGGCAAAGAGGAACTGGTATTGGTGGAGGAAATGATGAAAGAGAGCAG 2550 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTT 175614 ||| | || ||||| || || || |||||||| ||| | | ||||| | | || Sbjct 2549 ACACTGAACCAACTTCTTACTGAAATGGATGGTTTTACTGGTAACACTGGAGTCATTGTC 2490 Query 175615 ATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTT 175674 ||||| || |||||| | || || |||||| | || | ||| | || || | ||| Sbjct 2489 ATTGCTGCTACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTAGACCTGGAAGGTTT 2430 Query 175675 GAT 175677 ||| Sbjct 2429 GAT 2427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596094849912320