Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021063.1 Length=47724 Score E Sequences producing significant alignments: (Bits) Value seq63378 98.7 3e-16 >seq63378 Length=15302 Score = 98.7 bits (108), Expect = 3e-16 Identities = 405/633 (64%), Gaps = 42/633 (7%) Strand=Plus/Plus Query 2050 CGACGGCTGGGACGCCAACGGGCAACCAGTCGGCCGTCCTTGG-TCGACGGTGCGGACGC 2108 |||||||||||||||| ||||||| || |||| ||| || ||| ||||| | |||| Sbjct 2893 CGACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGGATCGACT-TCAAGACGA 2951 Query 2109 CGCTC---GTGCAGATCACCGCAGTGGATGAGAAACAGACCGCCAACACGTGGGGCCCCG 2165 || || | | ||||||| || | ||| |||||||||| || Sbjct 2952 TCATCAACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCAGAACACGTGGGCACCGA 3011 Query 2166 TCCTCGAGATGCTGCGTGAGGAAGCGCCGATCCACTCCGAGTACTCCGTCAACCCGATGG 2225 | ||||||||| ||| || |||| || || |||| | |||| ||||||||| Sbjct 3012 TGCTCGAGATGGCGCGCACCGACGCGCTTGTCAAC---GAGTTCGACGTCGACCCGATGG 3068 Query 2226 AGACCTTCGTCGCCCTGCCCAACCGCGGCCGCATGGAGTGCCGTACTGCTTCGTCTCGAT 2285 | || ||| |||| | ||| ||||| || ||| || || | || || | Sbjct 3069 ACACGTTCATCGCGATCCCCG---GCGGCAAGATCGAGCCGCGCACCTCGTCCGGCCGGT 3125 Query 2286 CCATCAAGGGTGCACGCGCTCACTTCGCTGTGCTC---GATCAGACGGAGGAGTGGGTGC 2342 |||||||||| | || || |||| | | || || ||||| ||||||||||| Sbjct 3126 CCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCATGGACCAGACCGAGGAGTGGGTCA 3185 Query 2343 CGTCTAACGGTGGGCCTCGTCTTGCCAGGACCATGCGAGTCAACGCCGCGAAGGTCGGTG 2402 | ||||| || | || || || || ||| || |||| | |||||| | Sbjct 3186 AGGGCAACGGCGGTCTCCGCCTGGCGCAGAACATCCGCAACAACTCGACGAAGGCGTCCG 3245 Query 2403 GGACGACGCTGGAGTCGCCGAACGCCTACACTCCCGGTGAGGGGTCGGTTGCGGAGGCCT 2462 | | ||| | ||||| |||||||| | ||| || || ||| ||||| || ||||| | Sbjct 3246 GCATCACGATCGAGTCCCCGAACGCGTTCACCCCTGGCGAGAACTCGGTCGCCGAGGCAT 3305 Query 2463 CAGCGAAGTTCTGGGAC--------------GACAT--CAAG----CGCGGCCGGGCAAA 2502 | ||| |||||| || || | || |||||||| | Sbjct 3306 CCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAATACCCAGACCTCGCGGCCGCCC--- 3362 Query 2503 GTCAGAAGGGCTGTACTACAACCATCGCGAGGCTCCGCCTGAGACGGACTTTGACTCCGA 2562 | |||| || |||| |||| ||||| || ||| | || || ||| | | | Sbjct 3363 GCCAGATC--CT---CTACGACCACCGCGAAGCGCCGGCCGACACCGACCCCGCCGACCG 3417 Query 2563 CGACTCACTCATGGCTGGGCTCCGTGTGGCATATGGCGACAGCTCGGGTCACCCGGACGG 2622 ||| || || || || || ||||| || || ||||||||||||| ||||| ||||| Sbjct 3418 CGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACAGCTCGGACCACCCCGACGG 3477 Query 2623 CTGCGTGATCCACGATCCGCCCTGCCCGCCCGG 2655 |||||| |||||| | ||||| ||| |||||| Sbjct 3478 CTGCGTCATCCACCAGCCGCCGTGCGAGCCCGG 3510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152479836502848