Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_021063.1
Length=47724
Score E
Sequences producing significant alignments: (Bits) Value
seq63378 98.7 3e-16
>seq63378
Length=15302
Score = 98.7 bits (108), Expect = 3e-16
Identities = 405/633 (64%), Gaps = 42/633 (7%)
Strand=Plus/Plus
Query 2050 CGACGGCTGGGACGCCAACGGGCAACCAGTCGGCCGTCCTTGG-TCGACGGTGCGGACGC 2108
|||||||||||||||| ||||||| || |||| ||| || ||| ||||| | ||||
Sbjct 2893 CGACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGGATCGACT-TCAAGACGA 2951
Query 2109 CGCTC---GTGCAGATCACCGCAGTGGATGAGAAACAGACCGCCAACACGTGGGGCCCCG 2165
|| || | | ||||||| || | ||| |||||||||| ||
Sbjct 2952 TCATCAACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCAGAACACGTGGGCACCGA 3011
Query 2166 TCCTCGAGATGCTGCGTGAGGAAGCGCCGATCCACTCCGAGTACTCCGTCAACCCGATGG 2225
| ||||||||| ||| || |||| || || |||| | |||| |||||||||
Sbjct 3012 TGCTCGAGATGGCGCGCACCGACGCGCTTGTCAAC---GAGTTCGACGTCGACCCGATGG 3068
Query 2226 AGACCTTCGTCGCCCTGCCCAACCGCGGCCGCATGGAGTGCCGTACTGCTTCGTCTCGAT 2285
| || ||| |||| | ||| ||||| || ||| || || | || || |
Sbjct 3069 ACACGTTCATCGCGATCCCCG---GCGGCAAGATCGAGCCGCGCACCTCGTCCGGCCGGT 3125
Query 2286 CCATCAAGGGTGCACGCGCTCACTTCGCTGTGCTC---GATCAGACGGAGGAGTGGGTGC 2342
|||||||||| | || || |||| | | || || ||||| |||||||||||
Sbjct 3126 CCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCATGGACCAGACCGAGGAGTGGGTCA 3185
Query 2343 CGTCTAACGGTGGGCCTCGTCTTGCCAGGACCATGCGAGTCAACGCCGCGAAGGTCGGTG 2402
| ||||| || | || || || || ||| || |||| | |||||| |
Sbjct 3186 AGGGCAACGGCGGTCTCCGCCTGGCGCAGAACATCCGCAACAACTCGACGAAGGCGTCCG 3245
Query 2403 GGACGACGCTGGAGTCGCCGAACGCCTACACTCCCGGTGAGGGGTCGGTTGCGGAGGCCT 2462
| | ||| | ||||| |||||||| | ||| || || ||| ||||| || ||||| |
Sbjct 3246 GCATCACGATCGAGTCCCCGAACGCGTTCACCCCTGGCGAGAACTCGGTCGCCGAGGCAT 3305
Query 2463 CAGCGAAGTTCTGGGAC--------------GACAT--CAAG----CGCGGCCGGGCAAA 2502
| ||| |||||| || || | || |||||||| |
Sbjct 3306 CCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAATACCCAGACCTCGCGGCCGCCC--- 3362
Query 2503 GTCAGAAGGGCTGTACTACAACCATCGCGAGGCTCCGCCTGAGACGGACTTTGACTCCGA 2562
| |||| || |||| |||| ||||| || ||| | || || ||| | | |
Sbjct 3363 GCCAGATC--CT---CTACGACCACCGCGAAGCGCCGGCCGACACCGACCCCGCCGACCG 3417
Query 2563 CGACTCACTCATGGCTGGGCTCCGTGTGGCATATGGCGACAGCTCGGGTCACCCGGACGG 2622
||| || || || || || ||||| || || ||||||||||||| ||||| |||||
Sbjct 3418 CGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACAGCTCGGACCACCCCGACGG 3477
Query 2623 CTGCGTGATCCACGATCCGCCCTGCCCGCCCGG 2655
|||||| |||||| | ||||| ||| ||||||
Sbjct 3478 CTGCGTCATCCACCAGCCGCCGTGCGAGCCCGG 3510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152479836502848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |