Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq32996 118 2e-21 seq6347 118 2e-21 seq6200 102 1e-16 seq15487 93.3 8e-14 seq51266 91.5 3e-13 seq16715 86.0 1e-11 seq3506 84.2 4e-11 >seq32996 Length=3898 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | ||||| || || |||| || | ||||| ||| || || || Sbjct 1315 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCC 1374 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | ||| ||||| ||||| || |||||||| || || ||| Sbjct 1375 GCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 1434 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || || | ||| | ||| |||||||| ||| |||| Sbjct 1435 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 1494 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || ||||| | || || |||||||||||||| Sbjct 1495 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 1544 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | ||||| || || || || || ||||| || ||||| ||| Sbjct 1855 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 1914 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| ||| || || || ||| || || ||||||||||| || || Sbjct 1915 TTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCG 1974 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| ||||||||| Sbjct 1975 GTCAGAGTTTTAACAAAGATTTGCATT 2001 >seq6347 Length=16439 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| || || || | || | ||| || || |||||||| Sbjct 13698 ATGCCACCACGCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCT 13757 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||||| ||| || ||||| ||||| ||||| || | || || ||||||||| Sbjct 13758 GCAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCAAAGATCAGCCTTTGCTGATCAGGA 13817 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || || | || | ||| || || || ||| |||| Sbjct 13818 GGAATTCCTTCCTTGTCTTGAATCTTTGCCTTAACATTATCGATTGTGTCAGAACTCTCA 13877 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || || || ||||| |||||||| Sbjct 13878 ACCTCGAGAGTTATGGTCTTGCCAGTAAGGGTCTTAACAAAGATTTGCAT 13927 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| || || |||| ||| | ||| | |||||| ||||| || || Sbjct 12558 ATTCCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCA 12617 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || ||| ||| || | || || || ||||||||||| | ||| || || || Sbjct 12618 GCAAGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGT 12677 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | || | || ||| || || ||| ||| Sbjct 12678 GGAATCCCTTCTTTGTCTTGGATCTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCA 12737 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || |||| || || ||||| || ||||| Sbjct 12738 ACCTCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCAT 12787 >seq6200 Length=22545 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | || | ||| || || || ||||||| Sbjct 22067 ACCACCACGGAGACGGAGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGC 22126 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | || |||||||| ||||| || | ||| || || || || Sbjct 22127 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 22186 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| ||| | ||| || || |||||||||||||| Sbjct 22187 AATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCGATGGTGTCGGAAGACTCAAC 22246 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || ||||| ||||| || || || ||||| || Sbjct 22247 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 22297 >seq15487 Length=17016 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| | ||| ||||| || |||||||| || | ||||| || || || || Sbjct 16661 ATCTTCAAGTTGCTCTCCAGCAAAGATCAATCTCTGCTGGTTTGGAGGAATACCCTCCTT 16720 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | ||| | ||| |||||||| ||| |||||| || | ||| || Sbjct 16721 GTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTCAACCTCCAAAGTAAT 16780 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | || || |||||||||||||| Sbjct 16781 TGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 16816 >seq51266 Length=1200 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||| | | ||||| || || ||| || | ||||| ||| || || || Sbjct 771 ATGCCACCTGTAAGACGAAGAACAAGGGGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 830 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | ||| | ||| | ||| || |||||||| || | ||| Sbjct 831 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGAAAAGATCAATCTCTGCTGGTTTGGA 890 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| || || | ||| | ||| |||||||| ||| |||| Sbjct 891 GGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTCA 950 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | | | || || || ||||| | || || | |||||||||||| Sbjct 951 ACCTCCAAATTAATTGTCTTCCCTGTCAATGTCTTGATAAATATTTGCAT 1000 >seq16715 Length=90750 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || || ||||| ||||| || || || || ||||| || || || Sbjct 54422 TGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGTGGGATACCCTCTTTGTCCTGAATC 54481 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || ||||| |||||| || || || ||||| || || Sbjct 54482 TTGGCCTTAACATTGTCGATGGTGTCGGAGCTCTCAACCTCAAGTGTAATAGTCTTGCCA 54541 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | ||||| ||||| || |||||| Sbjct 54542 GTCAAGGTTTTGACAAAGATCTGCATT 54568 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || || ||||| || || || || || |||||||| || || ||| Sbjct 65862 TGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGAATT 65921 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || || ||| || || || || || ||||| || || Sbjct 65922 TTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTAATAGTCTTGCCA 65981 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || ||||| |||||||| Sbjct 65982 GTCAAGGTCTTCACAAAGATTTGCAT 66007 >seq3506 Length=94386 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || |||||||| | || || || || ||| | ||||||||||| |||||||| Sbjct 52538 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAAGGATTCCTTCTTTGTCTTGTATC 52479 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || ||| ||||||| | | || ||||| ||||| || |||| || Sbjct 52478 TTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGTTTAACTG 52419 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || ||||| |||||||| Sbjct 52418 GTCAGAGTTTTCACGAATATCTGCATTTT 52390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898938455028480