Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq32996 118 2e-21
seq6347 118 2e-21
seq6200 102 1e-16
seq15487 93.3 8e-14
seq51266 91.5 3e-13
seq16715 86.0 1e-11
seq3506 84.2 4e-11
>seq32996
Length=3898
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| |||||||| | ||||| || || |||| || | ||||| ||| || || ||
Sbjct 1315 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCC 1374
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || || ||| || | ||| ||||| ||||| || |||||||| || || |||
Sbjct 1375 GCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 1434
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || || ||||| || || | ||| | ||| |||||||| ||| ||||
Sbjct 1435 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 1494
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || | ||| || || || ||||| | || || ||||||||||||||
Sbjct 1495 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 1544
Score = 95.1 bits (104), Expect = 2e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||| || ||||| || | ||||| || || || || || ||||| || ||||| |||
Sbjct 1855 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 1914
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | ||| | ||| ||| || || || ||| || || ||||||||||| || ||
Sbjct 1915 TTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCG 1974
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| || ||||| ||||| |||||||||
Sbjct 1975 GTCAGAGTTTTAACAAAGATTTGCATT 2001
>seq6347
Length=16439
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||| | || ||||| || || || | || | ||| || || ||||||||
Sbjct 13698 ATGCCACCACGCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCT 13757
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | |||||| ||| || ||||| ||||| ||||| || | || || |||||||||
Sbjct 13758 GCAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCAAAGATCAGCCTTTGCTGATCAGGA 13817
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| |||||||| || ||||| || || | || | ||| || || || ||| ||||
Sbjct 13818 GGAATTCCTTCCTTGTCTTGAATCTTTGCCTTAACATTATCGATTGTGTCAGAACTCTCA 13877
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || |||||||| || || || || || || || ||||| ||||||||
Sbjct 13878 ACCTCGAGAGTTATGGTCTTGCCAGTAAGGGTCTTAACAAAGATTTGCAT 13927
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || |||||||| || || |||| ||| | ||| | |||||| ||||| || ||
Sbjct 12558 ATTCCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCA 12617
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || ||| ||| || | || || || ||||||||||| | ||| || || ||
Sbjct 12618 GCAAGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGT 12677
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||| ||||| || || | || | || ||| || || ||| |||
Sbjct 12678 GGAATCCCTTCTTTGTCTTGGATCTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCA 12737
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || || |||| || || ||||| || |||||
Sbjct 12738 ACCTCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCAT 12787
>seq6200
Length=22545
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | || || || ||||| | || | ||| || || || |||||||
Sbjct 22067 ACCACCACGGAGACGGAGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGC 22126
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || | | ||| || | || |||||||| ||||| || | ||| || || || ||
Sbjct 22127 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 22186
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| ||||| || || || || |||| ||| | ||| || || ||||||||||||||
Sbjct 22187 AATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCGATGGTGTCGGAAGACTCAAC 22246
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| || || || || || ||||| ||||| || || || ||||| ||
Sbjct 22247 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 22297
>seq15487
Length=17016
Score = 93.3 bits (102), Expect = 8e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||| | ||| ||||| || |||||||| || | ||||| || || || ||
Sbjct 16661 ATCTTCAAGTTGCTCTCCAGCAAAGATCAATCTCTGCTGGTTTGGAGGAATACCCTCCTT 16720
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||||| || || | ||| | ||| |||||||| ||| |||||| || | ||| ||
Sbjct 16721 GTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTCAACCTCCAAAGTAAT 16780
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| | || || ||||||||||||||
Sbjct 16781 TGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 16816
>seq51266
Length=1200
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| |||||| | | ||||| || || ||| || | ||||| ||| || || ||
Sbjct 771 ATGCCACCTGTAAGACGAAGAACAAGGGGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 830
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || || ||| || | ||| | ||| | ||| || |||||||| || | |||
Sbjct 831 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGAAAAGATCAATCTCTGCTGGTTTGGA 890
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || ||||| ||||| || || | ||| | ||| |||||||| ||| ||||
Sbjct 891 GGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTCA 950
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || | | | || || || ||||| | || || | ||||||||||||
Sbjct 951 ACCTCCAAATTAATTGTCTTCCCTGTCAATGTCTTGATAAATATTTGCAT 1000
>seq16715
Length=90750
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||||||||| || || ||||| ||||| || || || || ||||| || || ||
Sbjct 54422 TGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGTGGGATACCCTCTTTGTCCTGAATC 54481
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | ||| || || ||||| |||||| || || || ||||| || ||
Sbjct 54482 TTGGCCTTAACATTGTCGATGGTGTCGGAGCTCTCAACCTCAAGTGTAATAGTCTTGCCA 54541
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| | ||||| ||||| || ||||||
Sbjct 54542 GTCAAGGTTTTGACAAAGATCTGCATT 54568
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||||||||| || || ||||| || || || || || |||||||| || || |||
Sbjct 65862 TGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGAATT 65921
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | ||| ||| || || ||| || || || || || ||||| || ||
Sbjct 65922 TTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTAATAGTCTTGCCA 65981
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| | || || ||||| ||||||||
Sbjct 65982 GTCAAGGTCTTCACAAAGATTTGCAT 66007
>seq3506
Length=94386
Score = 84.2 bits (92), Expect = 4e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || || |||||||| | || || || || ||| | ||||||||||| ||||||||
Sbjct 52538 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAAGGATTCCTTCTTTGTCTTGTATC 52479
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || ||| ||||||| | | || ||||| ||||| || |||| ||
Sbjct 52478 TTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGTTTAACTG 52419
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || ||||| || ||||| ||||||||
Sbjct 52418 GTCAGAGTTTTCACGAATATCTGCATTTT 52390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898938455028480
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