Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq46021 102 1e-16 seq32996 98.7 1e-15 seq6347 98.7 1e-15 seq51266 95.1 2e-14 seq15487 95.1 2e-14 seq6171 93.3 6e-14 seq3506 91.5 2e-13 seq63460 87.8 3e-12 seq16715 87.8 3e-12 >seq46021 Length=44830 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || || |||| || || |||||||| ||||| || || Sbjct 38575 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 38634 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || ||| || ||||| || |||||||| || ||||| Sbjct 38635 TCAGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGAC 38694 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||||||| ||||||||||||||||| ||| Sbjct 38695 CAACAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGAT 38733 >seq32996 Length=3898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || || ||||| || || || ||| Sbjct 490 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACAATCACATTGGAGGTGGAGAGCTCT 431 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| || ||||| || || ||||| || || ||||| ||| Sbjct 430 GATACTATTGACAATGTGAAAGCAAAGATACAGGACAAGGAAGGGATCCCACCAGATCAA 371 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | | || | |||| || ||| Sbjct 370 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTACAAT 311 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || |||||| Sbjct 310 ATCCAGAAAGAGTCTACTCTTCAT 287 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| |||||||| || || || ||||| || || || || ||| Sbjct 1544 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1485 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || ||||| || || || || |||||||| || Sbjct 1484 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 1425 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || ||||| || || ||| || || || | ||||| || Sbjct 1424 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 1365 Query 156003 AT 156004 || Sbjct 1364 AT 1363 >seq6347 Length=16439 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | || |||||||||||||| || ||||| || || || || || Sbjct 12560 AATGCAGATATTTGTCAAGACATTGACTGGAAAGACGATTACCTTGGAGGTGGAGAGCTC 12501 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| || || || ||||| || || || || ||||| || Sbjct 12500 AGATACCATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCA 12441 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||||| ||| ||||||||||| || ||| Sbjct 12440 GCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAGGAT 12404 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||||||||| |||||||| | || || ||| || Sbjct 13243 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACTATTACCCTTGAGGTTGAAAGCTCA 13184 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| || || || || ||||| |||||||| || Sbjct 13183 GACACTATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 13124 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||||| ||| || ||||| || || ||| Sbjct 13123 CAAAGGTTGATTTTTGCTGGAAAGCAACTTGAGGAT 13088 >seq51266 Length=1200 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||||| || |||||||| || || || |||| || || || || ||| Sbjct 1000 ATGCAAATATTTATCAAGACATTGACAGGGAAGACAATTAATTTGGAGGTTGAGAGTTCA 941 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || ||||| ||||| || || |||||| | || Sbjct 940 GATACTATCAACAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCAAACCAG 881 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | | | || |||| || |||||| || || || ||||||| || Sbjct 880 CAGAGATTGATCTTTTCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACAAC 821 Query 156003 AT 156004 || Sbjct 820 AT 819 Score = 89.7 bits (98), Expect = 8e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || || ||| | || || || ||| Sbjct 541 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACAATCACAATGGAGGTGGAGAGCTCT 482 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| || ||||| || || || || || || ||||| ||| Sbjct 481 GATACTATTGACAATGTGAAAGCAAAGATACAGGACAAGGAGGG-ATTCCACCAGATCAA 423 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | | || | |||| || ||| Sbjct 422 CAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTACAGACTACAAT 363 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || ||||||| | || |||||| Sbjct 362 ATCCGCAAAGAGTCTACTCTTCAT 339 >seq15487 Length=17016 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| || || || ||||| || || || || ||| Sbjct 16816 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 16757 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || ||||| || || || || |||||| | || Sbjct 16756 GATACTATCAACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAAACCAG 16697 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || |||| || |||||| || || || ||||||| || Sbjct 16696 CAGAGATTGATCTTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACAAC 16637 Query 156003 AT 156004 || Sbjct 16636 AT 16635 >seq6171 Length=36435 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||||||||||||| ||| |||||||| ||||| || ||||| || || || ||| Sbjct 4968 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 4909 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||||| || | |||||| | |||||||||||| ||| || | ||| Sbjct 4908 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 4849 Query 18275 AATATACCCTCAACGCACGCGAACGC 18300 || || || ||||| || || || || Sbjct 4848 AAAATCCCTTCAACACAAGCAAAAGC 4823 >seq3506 Length=94386 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| ||||| | ||||| |||| | |||| ||||| | ||||||||| | Sbjct 52390 AAAATGCAGATATTCGTGAAAACTCTGACCAGTTAAACCATTACTCTGGAAGTCGAA--T 52447 Query 155880 TCTG--ATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAG 155937 || | ||| ||| || | || || |||||||| |||||||| || | ||||| Sbjct 52448 TCAGCAATACTATCGACAATGCTAAGGCCAAGATACAAGACAAAGAAGGAATCCTTCCAG 52507 Query 155938 AACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 | || ||||| |||||| ||| |||||||||||||| ||| Sbjct 52508 ACCAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTCGAGGAT 52548 >seq63460 Length=19418 Score = 87.8 bits (96), Expect = 3e-12 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || || | || || || |||||||| ||||| || || Sbjct 5139 AAAATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 5080 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || ||||| ||| || || || || |||||||| || ||||| Sbjct 5079 TCAGACACCATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCACCAGAC 5020 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || ||||||| || || ||||||||||| ||| | |||| || | || || Sbjct 5019 CAGCAGAGGTTGATTTTCGCAGGAAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTAC 4960 Query 156000 AATATATCCAAA 156011 | | ||||||| Sbjct 4959 A--ACATCCAAA 4950 >seq16715 Length=90750 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || |||| ||||| || || || | || || ||| || Sbjct 66236 AATGCAAATTTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 66177 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| ||||| ||| || || || || || |||||||| || ||||| || Sbjct 66176 CGACACTATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 66117 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||||||||| | |||||| |||||||| || || Sbjct 66116 GCAAAGATTGATCTTTGCCGGAAAGCAGCTTGAGGA 66081 Score = 86.0 bits (94), Expect = 9e-12 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT-TC 155881 ||||| || ||| | || || |||||||| ||||| || || || || | || ||| || Sbjct 54111 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACCATCACTTTGGAGG-CGGAGAGCTC 54053 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||||| || || || || || || || || || || ||||| || Sbjct 54052 TGATACTATTGACAACGTTAAGGCCAAGATTCAGGACAAGGAGGGAATCCCACCAGATCA 53993 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | ||| || ||||||||||||||| || ||||| | || || | Sbjct 53992 GCAGAGGCTGATCTTTGCAGGGAAGCAGCTCGAAGATGGTAGGACTTTGGCTGACTACA- 53934 Query 156002 TATATCCAAA 156011 | ||||||| Sbjct 53933 -ACATCCAAA 53925 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||||||||| || || | || || ||| ||| Sbjct 55226 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAAACGATCACCCTTGAGGTGGAAAGTTCA 55167 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || || ||||| |||||||| || Sbjct 55166 GACACCATTGACAACGTTAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 55107 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | |||||| || || || |||||| | | ||| | | ||||| ||| Sbjct 55106 CAGAGACTGATCTTTGCCGGAAAACAACTTGAAGATGGCCGTACTCTCACTGATTACAAT 55047 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || ||||| || ||| Sbjct 55046 ATCCAGAAGGAGTCCACTCTTCACTTGGTG 55017 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | |||||||| ||||| || | || || ||| || Sbjct 66919 ATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCA 66860 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| || || || || || ||||||||||| || || || Sbjct 66859 GACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATACCCCCGGACCAG 66800 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || |||||||| ||||| | | ||| || | ||||| ||| Sbjct 66799 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGCCGTACTCTAGCCGATTACAAT 66740 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || || || ||| Sbjct 66739 ATTCAGAAGGAGTCAACTCTCCACTTGGTG 66710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731289576262400