Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6347 122 2e-22 seq3506 105 1e-17 seq32996 100 5e-16 seq24164 96.9 6e-15 seq46021 95.1 2e-14 seq51266 87.8 3e-12 seq15487 87.8 3e-12 seq63460 84.2 4e-11 >seq6347 Length=16439 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || ||||| | ||| | || || ||| || |||||| Sbjct 12786 ATACCACCCCTTAGGCGCAGCACCAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCT 12845 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || | | | || || | ||||| ||||||||||| || ||||| ||||||||| Sbjct 12846 GCTAGAGTCCTTCCATCCTCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGT 12905 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| |||||| || ||||| || || || || || Sbjct 12906 GGGATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCAATGGTGTCAGAACTCTCA 12965 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| || || || ||||| || | || |||||||| Sbjct 12966 ACCTCAAGGGTAATGGTCTTCCCTGTCAATGTCTTCACAAAAATCTGCAT 13015 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || |||||||||||||| || ||||| ||||| || || || || || ||| Sbjct 12405 TCCTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTA 12464 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || |||||| || |||||||| || || || | ||||| Sbjct 12465 TCCTGAATCTTCGCCTTCACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATC 12524 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| ||||| || | |||||||||||| Sbjct 12525 GTCTTTCCAGTCAATGTCTTGACAAATATCTGCATT 12560 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | || ||||| | || | |||||| ||||| ||||| Sbjct 12558 ATTCCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCA 12617 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | || || | || || |||||||||||||| | ||| ||||| ||| Sbjct 12618 GCAAGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGT 12677 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || || || ||| || || ||||| ||| Sbjct 12678 GGAATCCCTTCTTTGTCTTGGATCTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCA 12737 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || |||||||| || | || |||||||| Sbjct 12738 ACCTCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCAT 12787 >seq3506 Length=94386 Score = 105 bits (116), Expect = 1e-17 Identities = 115/151 (76%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| | || || ||||| || | ||||||||||| |||||||| Sbjct 52538 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAAGGATTCCTTCTTTGTCTTGTATC 52479 Query 171984 TTATTTTTTACATTAGTTATAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 || || |||| ||||||| |||| |||| ||||| ||||||||||||| || Sbjct 52478 TTGGCCTTAGCATTGTCGATAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTTAAC 52421 Query 172042 CAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || | ||||| | ||||||||||||||| Sbjct 52420 TGGTCAGAGTTTTCACGAATATCTGCATTTT 52390 >seq32996 Length=3898 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | ||||| ||| || ||||| Sbjct 1315 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCC 1374 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| || |||||||| || |||||||| ||||| || Sbjct 1375 GCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 1434 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| ||||||||||| || Sbjct 1435 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 1494 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || ||||| |||| ||||| ||||| Sbjct 1495 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 1544 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 171847 CTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAG 171906 |||| | || || || ||||| | ||| | ||| || || ||||| |||| | || Sbjct 866 CTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAG 925 Query 171907 ATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTC 171966 | |||| || | ||||||||||||||| || |||| ||| ||||| || || || | Sbjct 926 TCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATAC 985 Query 171967 CTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTA 172026 | || || ||||| || || ||| ||||| || |||||||| || || || | Sbjct 986 CCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCA 1045 Query 172027 GAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || || || | || || ||||| Sbjct 1046 ATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1088 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | ||||| ||| || |||||| Sbjct 1087 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 1146 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| || |||||||| || |||||||| ||||| || Sbjct 1147 GCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGG 1206 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || ||| || || || |||||||| || Sbjct 1207 GGAATACCCTCCTTATCTTGAATCTTTGCTTTGACGTTGTCAATGGTATCTGAACTCTCA 1266 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || || || || | || || ||||| Sbjct 1267 ACCTCCAAAGTAATTGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 1316 >seq24164 Length=196930 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| | || || ||| | || || | || || || || || || |||| Sbjct 29737 AATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCG 29678 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| || ||||| || ||||| || ||| ||| ||||| ||||| Sbjct 29677 CTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGT 29618 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || |||||| ||||| || || || || || || || | ||||| | ||| ||||| Sbjct 29617 GTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTG 29558 Query 172067 CATTTT 172072 |||||| Sbjct 29557 CATTTT 29552 >seq46021 Length=44830 Score = 95.1 bits (104), Expect = 2e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 171908 TCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCC 171967 |||| | || || | || ||||| || ||||| |||| ||||||||| ||||| || || Sbjct 38739 TCGTCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATGCC 38680 Query 171968 TTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAG 172027 ||| || ||||| || ||| || ||||| || || ||||| || ||||| |||| Sbjct 38679 TTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAA 38620 Query 172028 AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || || || | || || | || ||||||||||| Sbjct 38619 GGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 38575 >seq51266 Length=1200 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || ||||||| || | | | | || || | ||| | |||| ||| Sbjct 810 TCTTTCTGAATGTTGTAATCTGCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGAAAAG 869 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || |||||||| |||| || || || || ||||| ||||| || || ||| ||||| Sbjct 870 ATCAATCTCTGCTGGTTTGGAGGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTG 929 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 | ||||||||||| || || || | | |||| || || || || ||||| || || Sbjct 930 TTGATAGTATCTGAACTCTCAACCTCCAAATTAATTGTCTTCCCTGTCAATGTCTTGATA 989 Query 172059 AATATCTGCAT 172069 ||||| ||||| Sbjct 990 AATATTTGCAT 1000 >seq15487 Length=17016 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || ||||||| || | | | | || || | ||| | |||||||| Sbjct 16626 TCTTTCTGAATGTTGTAATCTGCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAAG 16685 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || |||||||| |||| || || || || || || ||||| || || ||| ||||| Sbjct 16686 ATCAATCTCTGCTGGTTTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTG 16745 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 | ||||||||||| || || || | |||||| || || || || ||||| || | Sbjct 16746 TTGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACA 16805 Query 172059 AATATCTGCAT 172069 ||||| ||||| Sbjct 16806 AATATTTGCAT 16816 >seq63460 Length=19418 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || || || ||||| || ||||| ||||| ||||| || ||||| || || || || Sbjct 4991 TGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATC 5050 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || || ||||| || ||||| |||| ||||| || || || Sbjct 5051 TTAGCCTTCACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCC 5110 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| || || | || ||||||||||| Sbjct 5111 GTTAGGGTCTTCACAAAGATCTGCATTTT 5139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904415692771200