Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq61823 1157 0.0 >seq61823 Length=3776 Score = 1157 bits (1282), Expect = 0.0 Identities = 1766/2485 (71%), Gaps = 58/2485 (2%) Strand=Plus/Minus Query 39204 CCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGACCGACACGTCG 39263 ||||||||||| |||| | ||| || | ||| | | | |||| | ||||| Sbjct 2927 CCGAAGCGGATGTCGT---CACCGACGGCCGCGAAGAACCCGATCGACTCGTTGACGTCC 2871 Query 39264 GGCGGCAGGACCCGAAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTGTTC 39323 ||||||| |||| | ||||||||| || ||||| ||||||| ||||| ||||| Sbjct 2870 GGCGGCATGACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGCTTGTCG 2811 Query 39324 TTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTC 39383 | |||| || || ||||| ||| || |||||||||||||| |||||||||| ||| Sbjct 2810 CGGGCGTCACCGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGCGCCTTG 2751 Query 39384 AGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCG 39443 || |||| || | | ||| || | ||||||||||||||||||||||||||||| ||| Sbjct 2750 AGGTACGCGGTCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTGAACGCG 2691 Query 39444 TAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCT 39503 ||| | | |||||| | ||| | |||||||| | || ||| ||| || |||||||||| Sbjct 2690 TAGTCGGAGAACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAGTAGCCG 2631 Query 39504 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTC 39563 || || ||||||| |||| || ||| |||| |||| ||||| ||||||| Sbjct 2630 TTGTCCTGCATGCCCTTCTCGAAGCCGGCGTACTGCTTGTCCAG---CTCGGACTTCTTC 2574 Query 39564 TT---GCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACC 39620 || |||||| || ||||| || | ||| ||||| ||||||| | ||||||| | | Sbjct 2573 TTCTTGCCCATGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCGACCTTC 2514 Query 39621 TGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATC 39680 ||||| | | |||||||||||||||||||| || | |||||| | | | ||| Sbjct 2513 TGCGCGATGGCCATGACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTGCCGATGATG 2454 Query 39681 TCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTA 39740 ||| |||| ||| | | ||| ||||||||||||||||||| ||||| |||||||| Sbjct 2453 TCCTTGAGGGGCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCGCCGTTCTTG 2394 Query 39741 CGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACG 39800 || || |||||||||||||| || | | |||||||| |||||||||||||| |||| | Sbjct 2393 CGCAGCGCGTAGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTACAGGGCGATG 2334 Query 39801 ACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCG 39860 | || |||||||||||||||||||||||||||| ||| |||||||| |||||||| | Sbjct 2333 AGCGCGGAGATGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCGCGCATCGGG 2274 Query 39861 CCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCG 39920 ||||||||||||||||| || || |||||||| | ||| ||| |||||| | || Sbjct 2273 CCGCCGTCGAGCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCGTACGCCTCG 2214 Query 39921 GGGTCGTCCAGGGGGATGTTCTCCAGGTCGACGT-GCTCCCCACGGTTGAGGCGGATGTT 39979 ||||| || || ||| |||| ||||||| || | ||||| ||||| |||||| Sbjct 2213 GGGTCCTCGAGCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTTCGTCTTGATGTT 2155 Query 39980 CTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAG 40039 |||| ||||| | ||||||||||||||||||||||| |||||||||||||| | ||| Sbjct 2154 GTCGAGGGCGTCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAG 2095 Query 40040 GCCCAGAGCCTC-GCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGTC 40098 ||| || | ||| || || |||||||||||||||||||| || |||||||||| | Sbjct 2094 GCCGAGCGACTCCGCTGC-CGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCCC 2036 Query 40099 GCACCCACACCGGGATGTGGTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGT 40158 || | | ||||||| ||||| ||| || ||| |||||||| || ||||| |||| Sbjct 2035 GCTTCATGATCGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCGGCCGCGT 1976 Query 40159 GCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGG 40218 |||||||| ||| || || || ||||| |||||||||||||||| ||| ||| | Sbjct 1975 GCACACCCCACTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACACCGTCTTCG 1916 Query 40219 CGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCT 40278 | || ||||||| || || |||| ||| |||| |||| | | || ||||| | Sbjct 1915 CCTCGGGGTCGGTCTCGACGACCGTGCGGACGTCGACGGCTTCCTTGAAGCGGGGGTGGT 1856 Query 40279 CGGCGTTGAAGATCCCGTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCT 40338 | || ||||||||| ||| || || |||||||||||| | ||| ||||| Sbjct 1855 CCTTGTCGAAGATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCGGCATCGCCT 1796 Query 40339 TGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCG 40398 |||| ||||||||||| | ||| || | | || ||||| | | |||||||| || Sbjct 1795 TGGTGAGCTTCTCGCCCATGCCGAACGGGAAGCCGAGGACGCGCGAGGAGTCCTTCAGCG 1736 Query 40399 CGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACT 40458 | | |||||||||| |||||||| |||||||||| || || | |||||||| Sbjct 1735 CCTGCTTCGCCTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCGACCCGTACT 1676 Query 40459 TCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACAT 40518 || ||||||||||| |||| |||| || || |||||||| |||||||||| ||||| | Sbjct 1675 TCTCGGTGACGTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGACGTCGAAGT 1616 Query 40519 CGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCG 40578 ||||||| || ||||| || ||||| ||||||||||||||||| || |||||| | || Sbjct 1615 CGGGCATCGAGACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCCGGATCG 1556 Query 40579 GGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCC 40638 |||||||||||||||| | | |||| || |||| ||||||||| | || || || | Sbjct 1555 GGTCGAGGTCGGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGGAACCACGAC 1496 Query 40639 CAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGA 40698 | |||||||| | || |||||| | ||||| |||| ||||||||| ||||| || |||| Sbjct 1495 CCGGGCCGACACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGACCACCAGGA 1436 Query 40699 AGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGCTTGCCG 40757 |||| |||||||||||||||| |||| || | ||||||| | || || ||| | Sbjct 1435 AGTAGCCCGGGAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGCGC-GCT---CC 1380 Query 40758 TGCTCGTAGTCCG---TGCCGTTCGGGTACCGACGACGCGCGCCTC-GGGCGACCTCGTC 40813 ||| | | | || |||||| ||||| || || || ||| | |||| ||| | Sbjct 1379 TGCACCTCGGGCGTGATGCCGTCGGGGTAGCG-GTACTCGAGCCCCTTCGCGATCTCCTT 1321 Query 40814 CTCGAACCAGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCAT-CAGGTTCT 40872 ||||||||| | ||| || | || |||||||||||||||||||||| || | Sbjct 1320 CTCGAACCACGACTGCTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGCATGTAGTTGGC 1261 Query 40873 CGTG--CTCGAACATGCCGGTGGTGTCGACCATCTCGGCGATGTCCAGCGTGGT-CCGCA 40929 |||| |||||| | || || ||| |||||||||| ||||||| | |||| Sbjct 1260 CGTGGTGTCGAACTCGACGTTG-----CACC-GCTCGGCGATGAGCAGCGTGTTGTCGCA 1207 Query 40930 TCCCCCACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTCAGGT 40989 || | | | | | ||| | | |||| ||||| || | || |||||||| Sbjct 1206 GGCC-----TCGGGGTTGTCGCGGAAGAGGT-GCCG-CATCTGCGCCGGCGTCTTCAGGT 1154 Query 40990 AGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTTATCGAGCGTGGTGCCGGTCTGGA 41049 || || || | | ||||| |||||||| |||| | ||||| | |||| ||| | Sbjct 1153 AGAACTCGTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGACCCGGACTGCA 1094 Query 41050 CGCACAGCAGTGCATCGTGAGCGAC--CGACTCCTCGGCGGTGACGTAGTGGGAATCGTT 41107 |||| || || || || | ||||| | || | |||| ||||||| ||||| Sbjct 1093 CGCAGAGGAGCGC--CGCGTGCGACTTGGCGTCGTGGGCGTGCGTGTAGTGGAGGTCGTT 1036 Query 41108 CGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCG 41167 |||| | ||| | | || |||||| |||| | || ||| ||| || | || ||| Sbjct 1035 CGTGCCGACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCCCATGATCCG 976 Query 41168 GCGCTCGATCTCGATGCCGTGGTCCATGAGTTCGAGCAGGTAGCGCTCGCGACCCAGGAT 41227 |||||||||||||| ||||||||||| | ||| | |||| || || | ||| Sbjct 975 GCGCTCGATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTTGCCGAAGAT 916 Query 41228 CTCCAGCCAGTCGCCAGCGGCCCTGACTGCCTCGTCGTACTGACCCAGGTTCAGCCTGGT 41287 || | |||| | || ||| ||| |||||||||||||| || ||| ||| | || Sbjct 915 GTCGCGGTAGTCCGCCGCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCGCAGGCGCGT 856 Query 41288 CATGACTTCGCCACCAGGGCACCCCGTGGTTCCGATGATGCCCTCGCTGCACTCGGCGAC 41347 | || || || ||||| ||||| || |||||||||||||| | || | Sbjct 855 CTGGATCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTGGTGTTCCTGCAG 796 Query 41348 GAGTTCCTTGTCGAGGCGGGCGTACTTGCCCATCAG--CCCCTCCTGGTAGGAGCGAGAC 41405 ||| || |||| | ||||| |||| | || |||||| | | | ||| Sbjct 795 GAGCTCGATGTCCATGCGGG---GCTTG--AAGTAGTACCCCTCGAGCGACGCCTTCGAC 741 Query 41406 GTGATGCGCATGAGGTTGTGAAGGCCCGTCTTGTTCTGCGCGAGCATGGTCATGTGCGTG 41465 | | || | |||||||| | ||| ||| |||||| |||| ||| |||||||||||| Sbjct 740 GACAGCCGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCGTCATGTGCGTG 681 Query 41466 TACGCACCGTTACCCGACACGTCGT-AACGCTTCTGCTCGGGCGA-CCCCCACTTGACCC 41523 |||| ||| ||| |||||||||| ||| | | ||| | | | | ||| | | Sbjct 680 TACGAACCCGCACCGGACACGTCGTCCCCGCCACCG-TCGCCCCAGCGCACACGGGTCTT 622 Query 41524 GGTCAAGGCTTCGCCTGTCGCCGGGGGCGACGTAGGCTTCCATTCCCACGATGGGCTTGA 41583 | | || || | || ||| | || ||| || || | || | ||| ||||||| Sbjct 621 GTCCGAG----CGGTGGGTGCGGGGCGTGATGTACGCCTCGGTGCCGATGATCGGCTTGA 566 Query 41584 TGCCCGCTGCGGTGGCCTGCTTGAACAGCTCGTAGGCACCATGCATGTGGCCGTGGTCGG 41643 ||| | || |||| ||| | | |||| | || || ||||| ||||||||||| Sbjct 565 CGCCGCCGGCCTTGGCGGCCTTCCAGAACTCGAACGCGCCGAACATGTTGCCGTGGTCGG 506 Query 41644 TCACTGCGATGGCTCGCATCCCCTG 41668 |||| || | ||| |||| ||||| Sbjct 505 TCACCGCCACGGCGGGCATGCCCTG 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163760901452352