Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_021299.1
Length=80955
Score E
Sequences producing significant alignments: (Bits) Value
seq63522 785 0.0
seq63210 226 1e-54
>seq63522
Length=32345
Score = 785 bits (870), Expect = 0.0
Identities = 740/940 (79%), Gaps = 6/940 (1%)
Strand=Plus/Plus
Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325
|||||||||||||||||| || ||||||||||| | |||||||||||||| | |
Sbjct 16774 GCCATCAACTGGAACCGCATCCAGGACGACAAGGACGTCGAGGTCTGGAACCGCCTCGTC 16833
Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385
||||||||||||||||| |||||| | || | || |||||| | | | | ||| ||||
Sbjct 16834 AACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCGAACGACGTGCAGTCGTGGAACACG 16893
Query 59386 CTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGAC 59445
|||||| || ||||| || || ||||| || |||||||||||||| |||| |||
Sbjct 16894 CTGACGCCGGCCGAGCAGAAGCTGACCATGCGCGTGTTCACCGGCCTGACCCTGCTGGAC 16953
Query 59446 ACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAG 59505
|| |||||||||||||| || || ||| || ||||| ||||||||||| ||||||||
Sbjct 16954 ACCATCCAGGGCACCGTCGGCGCCGTGTCGCTCATCCCCGACGCGATCACCCCGCACGAA 17013
Query 59506 GAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAAC 59565
|| || || ||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 17014 GAAGCCGTCTACACGAACATCGCGTTCATGGAGTCGGTGCACGCCAAGAGCTACTCCTCG 17073
Query 59566 ATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAG 59625
||||||||||| || ||| | ||||||||||| ||| ||||||||||| ||||||
Sbjct 17074 ATCTTCTCGACCCTCGCGTCGACGCCGGAGATCGACGAGGCATTCCGCTGGTCCGAGGAG 17133
Query 59626 AATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCCG 59685
|| ||||||||||| ||||| ||||| |||||||||||||||| ||| | |||
Sbjct 17134 AACCCGAACCTGCAGAAGAAGGCGTCCATCGTGATGGACTACTACCAGGGCGACAACCCG 17193
Query 59686 CTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTAC 59745
|||||||| ||||| || |||||| |||| ||| ||||||||||||||| |||||||||
Sbjct 17194 CTGAAGCGCAAGGTCGCGTCGACGCTGCTCGAGTCGTTCCTGTTCTACTCCGGCTTCTAC 17253
Query 59746 CTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGCTC 59805
||||||||| ||||||| || | ||||| |||||||| || ||| | ||||| ||
Sbjct 17254 CTGCCGATGCACTGGTCCTCGCGTGCCAAGCTCACGAACACCGCGGACCTCATCCGCCTG 17313
Query 59806 ATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCCTG 59865
||||| |||||||| || || || || ||||||||||| |||||||||||| || ||
Sbjct 17314 ATCATCCGTGACGAAGCCGTCCATGGGTACTACATCGGGTACAAGTTCCAGAAGGGGCTC 17373
Query 59866 GAGACTCAG--AACG-AGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTA 59922
||| ||| ||| |||| ||||| ||||||||||| ||||| | | || |
Sbjct 17374 GAG---CAGGCGACGCAGGCCGAGCGCGACGAGCTGAAGGATTACACCTTCTCGCTCATG 17430
Query 59923 CTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTG 59982
|||| |||||||||||||| | ||||||||||||| || ||||||| || || ||
Sbjct 17431 TACGAGCTGTACGACAACGAGGTGCAGTACACGCAGGACCTCTACGACGAGGTCGGTCTC 17490
Query 59983 ACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGC 60042
|| ||||||||||||| |||||||| ||||||||||||||||||||||||||| || |||
Sbjct 17491 ACCGAGGATGTCAAGAAGTTCCTGCACTACAACGCCAACAAGGCGCTGATGAACCTGGGC 17550
Query 60043 TACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTG 60102
|||||| || |||||||| || || || ||||| |||||||| || | || |||
Sbjct 17551 TACGAGCCGATGTTCCCGAAGAACATCACGGACGTGAACCCGGCGATCCTGTCCGCCCTG 17610
Query 60103 TCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATT 60162
|| || || |||||||||||||||||||||||||| |||||| |||| || ||
Sbjct 17611 TCGCCGAACGCCGACGAGAACCACGACTTCTTCTCGGGGTCTGGCTCGTCGTACGTCATC 17670
Query 60163 GGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202
|||||||| | | || || |||||||| ||||||||||
Sbjct 17671 GGCAAGGCCGTGAACACCGAGGACGAGGACTGGGACTTCT 17710
>seq63210
Length=11074
Score = 226 bits (250), Expect = 1e-54
Identities = 760/1161 (65%), Gaps = 104/1161 (9%)
Strand=Plus/Plus
Query 61693 ATGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGCAAGGGATCT 61752
||||||||| | | |||||||||||| || |||||||| |||||| ||| || |
Sbjct 6803 ATGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCC 6862
Query 61753 GCGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTTGGGGTGGAC 61812
| || ||| | |||||||| ||| ||||| |||| ||||| || || || ||||||
Sbjct 6863 ACCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGAC 6922
Query 61813 ATCGGCTGCGGCATGATTGCCGTCAAGACGCGGTTCCAGTGGGACGCACTGCACACCGCG 61872
||||||||||||||||| || ||| ||| | |||| | || || |||| |||||
Sbjct 6923 ATCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCTGCCCACCGAC 6982
Query 61873 AAGGCTGGCGCTCCGGATCTGGCTGCGCTGCGCCGTCAGATTGAGGCGGCGATTCCGCTG 61932
||| | || |||| ||| | || |||| ||| ||| || ||||||
Sbjct 6983 ----CTG-----CAGG----GGCTCCGC-GAGC----AGATCGAGCGGGCCATCCCGCTG 7024
Query 61933 TCTCCCGGCAACTACAACACGACGCTGTCGAAGTTCAACTTCACACGCAAGAA--GCA-C 61989
|| | || | ||| || |||| || | ||| | || ||| |
Sbjct 7025 TCCGCGGGGGCGTCGAAC----CG-----GAAGATCGTCGCCACCGCCGAGCCCCGCATC 7075
Query 61990 GAAGAGCT-GATCCAGTTGCAGCAGGAGCTGGACGTGGACCT----GTCTCACTCGCCGA 62044
| |||||| || | | || | | || || | | |||| | | | | || ||
Sbjct 7076 GCAGAGCTCGAGACGATGGCGGAGGCCGCCGG-CTTCGACCCCGCGGGCGCGCACGGCGG 7134
Query 62045 AGTGGATGGAGCAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCG 62104
|||| | | ||||| || | ||||| |||||||||||||||||| | | |||
Sbjct 7135 -GTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCG 7193
Query 62105 ACGCCGAGGACAACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGA 62164
||| ||||| | || |||||||||||||||||||| || ||||| |||||||||||||
Sbjct 7194 ACGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGA 7253
Query 62165 TCGCGCAGCGCCACATCAAGGCGGCTGTGGAGTACTGCGCAGAGGGTGCGCGGCTGGCTG 62224
|||| ||||| ||||||| | || | || || || || ||| | ||| |
Sbjct 7254 TCGCCCAGCGGCACATCACGATCGCGAAGAAG------GC-GATGGAGCGGTGGTGGAT- 7305
Query 62225 GCTCCGATTCGGTTCGCGCCCGCTACCGACTCCCTCACCGAGATCTCGCGTTCCTGGACG 62284
||| ||| ||| ||| || || |||| ||| | ||
Sbjct 7306 ----CGA--------------GCTGCCGGACCCC-------GACCTGGCGTACCTCGTCG 7340
Query 62285 AGGGAACGTGGATGTTCGACACGTACATCAAGGAGCTGGAGTGGGCCCAGCGGTTCGCGT 62344
|||| ||| ||||||| ||||||| |||||| |||||| |||| ||||||
Sbjct 7341 AGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCAGCACTTCGCGC 7400
Query 62345 ACCTGAACCGTGCGGAGATGATGGACCGCTTCGTCCAGGTG-TTCGCGTGGTGGATGGGC 62403
||| ||||| | ||||||||||||||| |||||| | | | |||| ||| |||| |
Sbjct 7401 TCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCTGCGCGAGGT-CATGGAC 7459
Query 62404 GTCGAGGCTCAGCGTGTCGAGGTGGAGCGCATCAACTGCCACCACAACTACACGGTCCCC 62463
| || | || | ||| | ||||| ||||||||||||||||||| |||| |
Sbjct 7460 G----CGCCCGTCGAG--GAGCTCGAGCGAATCAACTGCCACCACAACTTCACG-----C 7508
Query 62464 ACCGTGA-TCG-AC---GGGGAGCGAGTGTGGTTGACCCGCAAGGGGGCAATCGACGCGA 62518
| || || || || ||| || |||||| || |||| ||||| || ||| | ||||
Sbjct 7509 AGCGCGAGACGCACTGGGGGAAGTCCGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGA 7568
Query 62519 CCGAGGGCAAGCTGGGCGTGATCCCGGGCTCGATGGGCACCCGGTCGTACGTGGTGCGGG 62578
| ||| || ||| ||||||| || |||||||||||| ||||||||| || ||
Sbjct 7569 AGGCGGGGCAGGCCGGCCTGATCCCCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGG 7628
Query 62579 GGAAGGGCTGCAGCGCTTCTTTGCATTCTGCGCCCCATGGAGCCGGTCGCCGGTTCTCCC 62638
| ||| || | || | | || |||| || || ||||| || | || ||| |
Sbjct 7629 GCCTCGGCAACAAGCCGTCGCTCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGC 7688
Query 62639 GCACGAAGGC-CAAGGAACTGTTCACCAGGGATGACCTGGCCGAGCAG--ATGCAGGGCA 62695
| || ||| | | || |||||| || || || ||| || | ||| ||||
Sbjct 7689 GGTCGGCGGCACGGCGGAC-GTTCACGCACGACGAGCT--CCGGGCGGCCATGGTCGGCA 7745
Query 62696 TCGAGTGGCGCGAGGACATCGCCGAGAAGCTGGTCGATGAGATCCCGTCCTGCTACAAGG 62755
|||||| ||||| | |||| | | |||| ||||||||| | ||||||
Sbjct 7746 TCGAGTACCGCGA------CACCGACGCGTTCCTCGACGAGATCCCGGCGGCGTACAAGC 7799
Query 62756 ACATCGACCAGGTCATGGCCGATGCCG--AACCGCTGGTGGACGTGGTGACAACCCTGCG 62813
||||||||||| ||||| || |||| ||| | || || || || || |||||
Sbjct 7800 CGATCGACCAGGTGATGGCGGACGCCGCCGACCTCGTGTCGATCCGG-CAC-ACGCTGCG 7857
Query 62814 CCAGGTTCTCAACGTCAAGGG 62834
||| | ||||||| |||||
Sbjct 7858 GCAGATCGTCAACGTGAAGGG 7878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 258730293987264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |