Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq63522 785 0.0 seq63210 226 1e-54 >seq63522 Length=32345 Score = 785 bits (870), Expect = 0.0 Identities = 740/940 (79%), Gaps = 6/940 (1%) Strand=Plus/Plus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 |||||||||||||||||| || ||||||||||| | |||||||||||||| | | Sbjct 16774 GCCATCAACTGGAACCGCATCCAGGACGACAAGGACGTCGAGGTCTGGAACCGCCTCGTC 16833 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 ||||||||||||||||| |||||| | || | || |||||| | | | | ||| |||| Sbjct 16834 AACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCGAACGACGTGCAGTCGTGGAACACG 16893 Query 59386 CTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGAC 59445 |||||| || ||||| || || ||||| || |||||||||||||| |||| ||| Sbjct 16894 CTGACGCCGGCCGAGCAGAAGCTGACCATGCGCGTGTTCACCGGCCTGACCCTGCTGGAC 16953 Query 59446 ACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAG 59505 || |||||||||||||| || || ||| || ||||| ||||||||||| |||||||| Sbjct 16954 ACCATCCAGGGCACCGTCGGCGCCGTGTCGCTCATCCCCGACGCGATCACCCCGCACGAA 17013 Query 59506 GAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAAC 59565 || || || ||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 17014 GAAGCCGTCTACACGAACATCGCGTTCATGGAGTCGGTGCACGCCAAGAGCTACTCCTCG 17073 Query 59566 ATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAG 59625 ||||||||||| || ||| | ||||||||||| ||| ||||||||||| |||||| Sbjct 17074 ATCTTCTCGACCCTCGCGTCGACGCCGGAGATCGACGAGGCATTCCGCTGGTCCGAGGAG 17133 Query 59626 AATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCCG 59685 || ||||||||||| ||||| ||||| |||||||||||||||| ||| | ||| Sbjct 17134 AACCCGAACCTGCAGAAGAAGGCGTCCATCGTGATGGACTACTACCAGGGCGACAACCCG 17193 Query 59686 CTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTAC 59745 |||||||| ||||| || |||||| |||| ||| ||||||||||||||| ||||||||| Sbjct 17194 CTGAAGCGCAAGGTCGCGTCGACGCTGCTCGAGTCGTTCCTGTTCTACTCCGGCTTCTAC 17253 Query 59746 CTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGCTC 59805 ||||||||| ||||||| || | ||||| |||||||| || ||| | ||||| || Sbjct 17254 CTGCCGATGCACTGGTCCTCGCGTGCCAAGCTCACGAACACCGCGGACCTCATCCGCCTG 17313 Query 59806 ATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCCTG 59865 ||||| |||||||| || || || || ||||||||||| |||||||||||| || || Sbjct 17314 ATCATCCGTGACGAAGCCGTCCATGGGTACTACATCGGGTACAAGTTCCAGAAGGGGCTC 17373 Query 59866 GAGACTCAG--AACG-AGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTA 59922 ||| ||| ||| |||| ||||| ||||||||||| ||||| | | || | Sbjct 17374 GAG---CAGGCGACGCAGGCCGAGCGCGACGAGCTGAAGGATTACACCTTCTCGCTCATG 17430 Query 59923 CTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTG 59982 |||| |||||||||||||| | ||||||||||||| || ||||||| || || || Sbjct 17431 TACGAGCTGTACGACAACGAGGTGCAGTACACGCAGGACCTCTACGACGAGGTCGGTCTC 17490 Query 59983 ACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGC 60042 || ||||||||||||| |||||||| ||||||||||||||||||||||||||| || ||| Sbjct 17491 ACCGAGGATGTCAAGAAGTTCCTGCACTACAACGCCAACAAGGCGCTGATGAACCTGGGC 17550 Query 60043 TACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTG 60102 |||||| || |||||||| || || || ||||| |||||||| || | || ||| Sbjct 17551 TACGAGCCGATGTTCCCGAAGAACATCACGGACGTGAACCCGGCGATCCTGTCCGCCCTG 17610 Query 60103 TCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATT 60162 || || || |||||||||||||||||||||||||| |||||| |||| || || Sbjct 17611 TCGCCGAACGCCGACGAGAACCACGACTTCTTCTCGGGGTCTGGCTCGTCGTACGTCATC 17670 Query 60163 GGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202 |||||||| | | || || |||||||| |||||||||| Sbjct 17671 GGCAAGGCCGTGAACACCGAGGACGAGGACTGGGACTTCT 17710 >seq63210 Length=11074 Score = 226 bits (250), Expect = 1e-54 Identities = 760/1161 (65%), Gaps = 104/1161 (9%) Strand=Plus/Plus Query 61693 ATGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGCAAGGGATCT 61752 ||||||||| | | |||||||||||| || |||||||| |||||| ||| || | Sbjct 6803 ATGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCC 6862 Query 61753 GCGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTTGGGGTGGAC 61812 | || ||| | |||||||| ||| ||||| |||| ||||| || || || |||||| Sbjct 6863 ACCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGAC 6922 Query 61813 ATCGGCTGCGGCATGATTGCCGTCAAGACGCGGTTCCAGTGGGACGCACTGCACACCGCG 61872 ||||||||||||||||| || ||| ||| | |||| | || || |||| ||||| Sbjct 6923 ATCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCTGCCCACCGAC 6982 Query 61873 AAGGCTGGCGCTCCGGATCTGGCTGCGCTGCGCCGTCAGATTGAGGCGGCGATTCCGCTG 61932 ||| | || |||| ||| | || |||| ||| ||| || |||||| Sbjct 6983 ----CTG-----CAGG----GGCTCCGC-GAGC----AGATCGAGCGGGCCATCCCGCTG 7024 Query 61933 TCTCCCGGCAACTACAACACGACGCTGTCGAAGTTCAACTTCACACGCAAGAA--GCA-C 61989 || | || | ||| || |||| || | ||| | || ||| | Sbjct 7025 TCCGCGGGGGCGTCGAAC----CG-----GAAGATCGTCGCCACCGCCGAGCCCCGCATC 7075 Query 61990 GAAGAGCT-GATCCAGTTGCAGCAGGAGCTGGACGTGGACCT----GTCTCACTCGCCGA 62044 | |||||| || | | || | | || || | | |||| | | | | || || Sbjct 7076 GCAGAGCTCGAGACGATGGCGGAGGCCGCCGG-CTTCGACCCCGCGGGCGCGCACGGCGG 7134 Query 62045 AGTGGATGGAGCAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCG 62104 |||| | | ||||| || | ||||| |||||||||||||||||| | | ||| Sbjct 7135 -GTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCG 7193 Query 62105 ACGCCGAGGACAACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGA 62164 ||| ||||| | || |||||||||||||||||||| || ||||| ||||||||||||| Sbjct 7194 ACGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGA 7253 Query 62165 TCGCGCAGCGCCACATCAAGGCGGCTGTGGAGTACTGCGCAGAGGGTGCGCGGCTGGCTG 62224 |||| ||||| ||||||| | || | || || || || ||| | ||| | Sbjct 7254 TCGCCCAGCGGCACATCACGATCGCGAAGAAG------GC-GATGGAGCGGTGGTGGAT- 7305 Query 62225 GCTCCGATTCGGTTCGCGCCCGCTACCGACTCCCTCACCGAGATCTCGCGTTCCTGGACG 62284 ||| ||| ||| ||| || || |||| ||| | || Sbjct 7306 ----CGA--------------GCTGCCGGACCCC-------GACCTGGCGTACCTCGTCG 7340 Query 62285 AGGGAACGTGGATGTTCGACACGTACATCAAGGAGCTGGAGTGGGCCCAGCGGTTCGCGT 62344 |||| ||| ||||||| ||||||| |||||| |||||| |||| |||||| Sbjct 7341 AGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCAGCACTTCGCGC 7400 Query 62345 ACCTGAACCGTGCGGAGATGATGGACCGCTTCGTCCAGGTG-TTCGCGTGGTGGATGGGC 62403 ||| ||||| | ||||||||||||||| |||||| | | | |||| ||| |||| | Sbjct 7401 TCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCTGCGCGAGGT-CATGGAC 7459 Query 62404 GTCGAGGCTCAGCGTGTCGAGGTGGAGCGCATCAACTGCCACCACAACTACACGGTCCCC 62463 | || | || | ||| | ||||| ||||||||||||||||||| |||| | Sbjct 7460 G----CGCCCGTCGAG--GAGCTCGAGCGAATCAACTGCCACCACAACTTCACG-----C 7508 Query 62464 ACCGTGA-TCG-AC---GGGGAGCGAGTGTGGTTGACCCGCAAGGGGGCAATCGACGCGA 62518 | || || || || ||| || |||||| || |||| ||||| || ||| | |||| Sbjct 7509 AGCGCGAGACGCACTGGGGGAAGTCCGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGA 7568 Query 62519 CCGAGGGCAAGCTGGGCGTGATCCCGGGCTCGATGGGCACCCGGTCGTACGTGGTGCGGG 62578 | ||| || ||| ||||||| || |||||||||||| ||||||||| || || Sbjct 7569 AGGCGGGGCAGGCCGGCCTGATCCCCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGG 7628 Query 62579 GGAAGGGCTGCAGCGCTTCTTTGCATTCTGCGCCCCATGGAGCCGGTCGCCGGTTCTCCC 62638 | ||| || | || | | || |||| || || ||||| || | || ||| | Sbjct 7629 GCCTCGGCAACAAGCCGTCGCTCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGC 7688 Query 62639 GCACGAAGGC-CAAGGAACTGTTCACCAGGGATGACCTGGCCGAGCAG--ATGCAGGGCA 62695 | || ||| | | || |||||| || || || ||| || | ||| |||| Sbjct 7689 GGTCGGCGGCACGGCGGAC-GTTCACGCACGACGAGCT--CCGGGCGGCCATGGTCGGCA 7745 Query 62696 TCGAGTGGCGCGAGGACATCGCCGAGAAGCTGGTCGATGAGATCCCGTCCTGCTACAAGG 62755 |||||| ||||| | |||| | | |||| ||||||||| | |||||| Sbjct 7746 TCGAGTACCGCGA------CACCGACGCGTTCCTCGACGAGATCCCGGCGGCGTACAAGC 7799 Query 62756 ACATCGACCAGGTCATGGCCGATGCCG--AACCGCTGGTGGACGTGGTGACAACCCTGCG 62813 ||||||||||| ||||| || |||| ||| | || || || || || ||||| Sbjct 7800 CGATCGACCAGGTGATGGCGGACGCCGCCGACCTCGTGTCGATCCGG-CAC-ACGCTGCG 7857 Query 62814 CCAGGTTCTCAACGTCAAGGG 62834 ||| | ||||||| ||||| Sbjct 7858 GCAGATCGTCAACGTGAAGGG 7878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258730293987264