Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq61823 1272 0.0 >seq61823 Length=3776 Score = 1272 bits (1410), Expect = 0.0 Identities = 1846/2573 (72%), Gaps = 64/2573 (2%) Strand=Plus/Minus Query 39492 CCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGACCGACACGTCG 39551 ||||||||||| |||| | ||| || | ||| | | | |||| | ||||| Sbjct 2927 CCGAAGCGGATGTCGT---CACCGACGGCCGCGAAGAACCCGATCGACTCGTTGACGTCC 2871 Query 39552 GGCGGCAGGACCCGCAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTGTTC 39611 ||||||| |||| | ||||||||| || ||||| ||||||| ||||| ||||| Sbjct 2870 GGCGGCATGACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGCTTGTCG 2811 Query 39612 TTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTC 39671 | |||| || || ||||| ||| || |||||||||||||| |||||||||| ||| Sbjct 2810 CGGGCGTCACCGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGCGCCTTG 2751 Query 39672 AGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCG 39731 || |||| || | | ||| || | ||||||||||||||||||||||||||||| ||| Sbjct 2750 AGGTACGCGGTCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTGAACGCG 2691 Query 39732 TAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCT 39791 ||| | | |||||| | ||| | |||||||| | || ||| ||| || |||||||||| Sbjct 2690 TAGTCGGAGAACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAGTAGCCG 2631 Query 39792 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTC 39851 || || ||||||| |||| || ||| |||| |||| ||||| ||||||| Sbjct 2630 TTGTCCTGCATGCCCTTCTCGAAGCCGGCGTACTGCTTGTCCAG---CTCGGACTTCTTC 2574 Query 39852 TT---GCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACC 39908 || |||||| || ||||| || | ||| ||||| ||||||| | ||||||| | | Sbjct 2573 TTCTTGCCCATGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCGACCTTC 2514 Query 39909 TGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATC 39968 || || | | || ||||||||||||||||| || | |||||| | | | ||| Sbjct 2513 TGCGCGATGGCCATGACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTGCCGATGATG 2454 Query 39969 TCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTC 40028 ||| |||| ||| | | ||| ||||||||||||||||||| ||||| |||||||| Sbjct 2453 TCCTTGAGGGGCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCGCCGTTCTTG 2394 Query 40029 CGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACCAGGACGGTACAGCGCGACG 40088 || || |||||||||||||| || | | |||||||| || ||||||||||| |||| | Sbjct 2393 CGCAGCGCGTAGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTACAGGGCGATG 2334 Query 40089 ACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCG 40148 | || |||||||||||||||||||||||||||| ||| |||||||| |||||||| | Sbjct 2333 AGCGCGGAGATGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCGCGCATCGGG 2274 Query 40149 CCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCG 40208 ||||||||||||||||| || || |||||||| | ||| ||| |||||| | || Sbjct 2273 CCGCCGTCGAGCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCGTACGCCTCG 2214 Query 40209 GGGTCGTCCAGGGGGATGTTCTCCAGGTCGACGT-GCTCCCCACGGTTGAGGCGGATGTT 40267 ||||| || || ||| |||| ||||||| || | ||||| ||||| |||||| Sbjct 2213 GGGTCCTCGAGCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTTCGTCTTGATGTT 2155 Query 40268 CTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAG 40327 |||| ||||| | ||||||||||||||||||||||| |||||||||||||| | ||| Sbjct 2154 GTCGAGGGCGTCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAG 2095 Query 40328 GCCCAGAGCCTC-GCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCC 40386 ||| || | ||| || || |||||||||||||||||||| || |||||||||| || Sbjct 2094 GCCGAGCGACTCCGCTGC-CGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCCC 2036 Query 40387 GAACCCACACCGGGATGTGGTCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGT 40446 | | | ||||||| ||||| |||||| ||| |||||||| || ||||| |||| Sbjct 2035 GCTTCATGATCGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCGGCCGCGT 1976 Query 40447 GCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGG 40506 |||||||| ||| || || || ||||| |||||||||||||||| ||| ||| | Sbjct 1975 GCACACCCCACTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACACCGTCTTCG 1916 Query 40507 CGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCT 40566 | || ||||||| || || |||| ||| |||| |||| | | || ||||| | Sbjct 1915 CCTCGGGGTCGGTCTCGACGACCGTGCGGACGTCGACGGCTTCCTTGAAGCGGGGGTGGT 1856 Query 40567 CGGCGTTGAAGATCCCGTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCT 40626 | || ||||||||| ||| || || |||||||||||| | ||| ||||| Sbjct 1855 CCTTGTCGAAGATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCGGCATCGCCT 1796 Query 40627 TGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCG 40686 |||| ||||||||||| | ||| || | | || ||||| | | |||||||| || Sbjct 1795 TGGTGAGCTTCTCGCCCATGCCGAACGGGAAGCCGAGGACGCGCGAGGAGTCCTTCAGCG 1736 Query 40687 CGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACT 40746 | | |||||||||| |||||||| |||||||||| || || | |||||||| Sbjct 1735 CCTGCTTCGCCTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCGACCCGTACT 1676 Query 40747 TCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACAT 40806 || ||||||||||| |||| |||| || || |||||||| |||||||||| ||||| | Sbjct 1675 TCTCGGTGACGTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGACGTCGAAGT 1616 Query 40807 CGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCG 40866 ||||||| || ||||| || ||||| ||||||||||||||||| ||||||||| | || Sbjct 1615 CGGGCATCGAGACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCCGGATCG 1556 Query 40867 GGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCC 40926 |||||||||||||||| | | |||| || |||| ||||||||| | || || || | Sbjct 1555 GGTCGAGGTCGGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGGAACCACGAC 1496 Query 40927 CAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGA 40986 | |||||||| | || |||||| | ||||| |||| ||||||||| ||||| || |||| Sbjct 1495 CCGGGCCGACACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGACCACCAGGA 1436 Query 40987 AGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGCTTGCCG 41045 |||| |||||||||||||||| |||| || | ||||||| | || || ||| | Sbjct 1435 AGTAGCCCGGGAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGCGC-GCT---CC 1380 Query 41046 TGCTCGTAGTCCG---TGCCGTTCGGGTACCGACGACGCGCGCCTC-GGGCGACCTCGTC 41101 ||| | | | || |||||| ||||| || || || ||| | |||| ||| | Sbjct 1379 TGCACCTCGGGCGTGATGCCGTCGGGGTAGCG-GTACTCGAGCCCCTTCGCGATCTCCTT 1321 Query 41102 CTCGAACCAGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCAT-CAGGTTCT 41160 ||||||||| | ||| || | || |||||||||||||||||||||| || | Sbjct 1320 CTCGAACCACGACTGCTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGCATGTAGTTGGC 1261 Query 41161 CGTG--CTCGAACATGCCGGTGGTGTCGACCATCTCGGCGATGTCCAGCGTGGT-CCGCA 41217 |||| |||||| | || || ||| |||||||||| ||||||| | |||| Sbjct 1260 CGTGGTGTCGAACTCGACGTTG-----CACC-GCTCGGCGATGAGCAGCGTGTTGTCGCA 1207 Query 41218 TCCCCCACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTCAGGT 41277 || | | | | | ||| | | |||| ||||| || | || |||||||| Sbjct 1206 GGCC-----TCGGGGTTGTCGCGGAAGAGGT-GCCG-CATCTGCGCCGGCGTCTTCAGGT 1154 Query 41278 AGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTTATCGAGCGTGGTGCCGGTCTGGA 41337 || || || | | ||||| |||||||| |||| | ||||| | |||| ||| | Sbjct 1153 AGAACTCGTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGACCCGGACTGCA 1094 Query 41338 CGCACAGCAGTGCATCGTGAGCGAC--CGACTCCTCGGCGGTGACGTAGTGGGAATCGTT 41395 |||| || || || || | ||||| | || | |||| ||||||| ||||| Sbjct 1093 CGCAGAGGAGCGC--CGCGTGCGACTTGGCGTCGTGGGCGTGCGTGTAGTGGAGGTCGTT 1036 Query 41396 CGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCG 41455 |||| | ||| | | || |||||| |||| | || ||| ||| || | || ||| Sbjct 1035 CGTGCCGACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCCCATGATCCG 976 Query 41456 GCGCTCGATCTCGATGCCGTGGTCCATCAGCTCCAGGAAGTACCGGTCACGCCCGAAGAC 41515 |||||||||||||| ||||||||||||| ||| |||||| ||| ||||||| Sbjct 975 GCGCTCGATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTTGCCGAAGAT 916 Query 41516 CTCCAGGTA--CCGACCGGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTCAGCCGG 41573 || |||| ||| | || |||| | ||||||||||||||| |||||| ||| || Sbjct 915 GTCGCGGTAGTCCG--CCGCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCGCAGGCGC 858 Query 41574 GTCATGATCGCACCGCCAGGACATCCGGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCG 41633 ||| |||| | || || || || ||||| ||| | |||||||| ||| || Sbjct 857 GTCTGGATCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTGGTGTTCCTGC 798 Query 41634 ACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCCTGGTACGACCGCGA 41692 | || |||| ||||||||| || ||| | || | ||||| | ||| | ||| Sbjct 797 AGGAGCTCGATGTCCATGCGGGG---CTTGAAGTAGTA-CCCCTCGAGCGACGCCTTCGA 742 Query 41693 GCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGT 41752 ||| | |||||||||| ||||||| ||||| || || ||||| | |||||| Sbjct 741 CGACAGCCGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCGTCATGTGCGT 682 Query 41753 GTACGCACCCCGACCGCTCACGTCGT-ACCGCTTCTGGTCTTCCGTGCCCCACTGGACTC 41811 ||||| |||| |||| |||||||| |||| | ||| |||||| | || | Sbjct 681 GTACGAACCCGCACCGGACACGTCGTCCCCGCCAC-CGTC------GCCCCAGCGCACAC 629 Query 41812 GCTCCTGGTCGAAGCGG-GAGTCCGGGGC--CATGTACGCCTCGATGCCGATGATCGGCT 41868 | || ||| ||||| | || |||||| |||||||||||| ||||||||||||||| Sbjct 628 GGGTCTTGTCCGAGCGGTGGGTGCGGGGCGTGATGTACGCCTCGGTGCCGATGATCGGCT 569 Query 41869 TGACCCCAGCGGCCTGCGCCGAGGTGAAGAAGTCGTACGCACCGTGAAGGTTGCCGTGGT 41928 |||| || |||||| || | | |||| ||| |||| ||| | ||||||||||| Sbjct 568 TGACGCCGCCGGCCTTGGCGGCCTTCCAGAACTCGAACGCGCCGAACATGTTGCCGTGGT 509 Query 41929 CCGTCACTGCGACGGCAGGAGCACCCTGGCGGGCGACCTCGGCGACCATCTGCTTCATCC 41988 | ||||| || ||||| || |||||| |||| ||| || || | | | | Sbjct 508 CGGTCACCGCCACGGCGGGCATGCCCTGGGCGGCGGTCTCCGCCACGAGGTCGCCGAGTC 449 Query 41989 GAGCGGCCCCGTCGAGGAGGCTGTACTCGGAGTGGTTGTGCAGGTGGACGAAG 42041 | ||||| |||||||| | ||||||| ||| |||||||||||||||| Sbjct 448 GTGCGGCACCGTCGAGCATCGAGTACTCGCTGTGCACGTGCAGGTGGACGAAG 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164720175682752