Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_021304.1
Length=51552
Score E
Sequences producing significant alignments: (Bits) Value
seq61823 1272 0.0
>seq61823
Length=3776
Score = 1272 bits (1410), Expect = 0.0
Identities = 1846/2573 (72%), Gaps = 64/2573 (2%)
Strand=Plus/Minus
Query 39492 CCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGACCGACACGTCG 39551
||||||||||| |||| | ||| || | ||| | | | |||| | |||||
Sbjct 2927 CCGAAGCGGATGTCGT---CACCGACGGCCGCGAAGAACCCGATCGACTCGTTGACGTCC 2871
Query 39552 GGCGGCAGGACCCGCAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTGTTC 39611
||||||| |||| | ||||||||| || ||||| ||||||| ||||| |||||
Sbjct 2870 GGCGGCATGACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGCTTGTCG 2811
Query 39612 TTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTC 39671
| |||| || || ||||| ||| || |||||||||||||| |||||||||| |||
Sbjct 2810 CGGGCGTCACCGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGCGCCTTG 2751
Query 39672 AGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCG 39731
|| |||| || | | ||| || | ||||||||||||||||||||||||||||| |||
Sbjct 2750 AGGTACGCGGTCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTGAACGCG 2691
Query 39732 TAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCT 39791
||| | | |||||| | ||| | |||||||| | || ||| ||| || ||||||||||
Sbjct 2690 TAGTCGGAGAACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAGTAGCCG 2631
Query 39792 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTC 39851
|| || ||||||| |||| || ||| |||| |||| ||||| |||||||
Sbjct 2630 TTGTCCTGCATGCCCTTCTCGAAGCCGGCGTACTGCTTGTCCAG---CTCGGACTTCTTC 2574
Query 39852 TT---GCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACC 39908
|| |||||| || ||||| || | ||| ||||| ||||||| | ||||||| | |
Sbjct 2573 TTCTTGCCCATGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCGACCTTC 2514
Query 39909 TGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATC 39968
|| || | | || ||||||||||||||||| || | |||||| | | | |||
Sbjct 2513 TGCGCGATGGCCATGACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTGCCGATGATG 2454
Query 39969 TCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTC 40028
||| |||| ||| | | ||| ||||||||||||||||||| ||||| ||||||||
Sbjct 2453 TCCTTGAGGGGCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCGCCGTTCTTG 2394
Query 40029 CGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACCAGGACGGTACAGCGCGACG 40088
|| || |||||||||||||| || | | |||||||| || ||||||||||| |||| |
Sbjct 2393 CGCAGCGCGTAGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTACAGGGCGATG 2334
Query 40089 ACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCG 40148
| || |||||||||||||||||||||||||||| ||| |||||||| |||||||| |
Sbjct 2333 AGCGCGGAGATGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCGCGCATCGGG 2274
Query 40149 CCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCG 40208
||||||||||||||||| || || |||||||| | ||| ||| |||||| | ||
Sbjct 2273 CCGCCGTCGAGCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCGTACGCCTCG 2214
Query 40209 GGGTCGTCCAGGGGGATGTTCTCCAGGTCGACGT-GCTCCCCACGGTTGAGGCGGATGTT 40267
||||| || || ||| |||| ||||||| || | ||||| ||||| ||||||
Sbjct 2213 GGGTCCTCGAGCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTTCGTCTTGATGTT 2155
Query 40268 CTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAG 40327
|||| ||||| | ||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 2154 GTCGAGGGCGTCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAG 2095
Query 40328 GCCCAGAGCCTC-GCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCC 40386
||| || | ||| || || |||||||||||||||||||| || |||||||||| ||
Sbjct 2094 GCCGAGCGACTCCGCTGC-CGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCCC 2036
Query 40387 GAACCCACACCGGGATGTGGTCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGT 40446
| | | ||||||| ||||| |||||| ||| |||||||| || ||||| ||||
Sbjct 2035 GCTTCATGATCGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCGGCCGCGT 1976
Query 40447 GCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGG 40506
|||||||| ||| || || || ||||| |||||||||||||||| ||| ||| |
Sbjct 1975 GCACACCCCACTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACACCGTCTTCG 1916
Query 40507 CGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCT 40566
| || ||||||| || || |||| ||| |||| |||| | | || ||||| |
Sbjct 1915 CCTCGGGGTCGGTCTCGACGACCGTGCGGACGTCGACGGCTTCCTTGAAGCGGGGGTGGT 1856
Query 40567 CGGCGTTGAAGATCCCGTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCT 40626
| || ||||||||| ||| || || |||||||||||| | ||| |||||
Sbjct 1855 CCTTGTCGAAGATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCGGCATCGCCT 1796
Query 40627 TGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCG 40686
|||| ||||||||||| | ||| || | | || ||||| | | |||||||| ||
Sbjct 1795 TGGTGAGCTTCTCGCCCATGCCGAACGGGAAGCCGAGGACGCGCGAGGAGTCCTTCAGCG 1736
Query 40687 CGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACT 40746
| | |||||||||| |||||||| |||||||||| || || | ||||||||
Sbjct 1735 CCTGCTTCGCCTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCGACCCGTACT 1676
Query 40747 TCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACAT 40806
|| ||||||||||| |||| |||| || || |||||||| |||||||||| ||||| |
Sbjct 1675 TCTCGGTGACGTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGACGTCGAAGT 1616
Query 40807 CGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCG 40866
||||||| || ||||| || ||||| ||||||||||||||||| ||||||||| | ||
Sbjct 1615 CGGGCATCGAGACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCCGGATCG 1556
Query 40867 GGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCC 40926
|||||||||||||||| | | |||| || |||| ||||||||| | || || || |
Sbjct 1555 GGTCGAGGTCGGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGGAACCACGAC 1496
Query 40927 CAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGA 40986
| |||||||| | || |||||| | ||||| |||| ||||||||| ||||| || ||||
Sbjct 1495 CCGGGCCGACACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGACCACCAGGA 1436
Query 40987 AGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGCTTGCCG 41045
|||| |||||||||||||||| |||| || | ||||||| | || || ||| |
Sbjct 1435 AGTAGCCCGGGAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGCGC-GCT---CC 1380
Query 41046 TGCTCGTAGTCCG---TGCCGTTCGGGTACCGACGACGCGCGCCTC-GGGCGACCTCGTC 41101
||| | | | || |||||| ||||| || || || ||| | |||| ||| |
Sbjct 1379 TGCACCTCGGGCGTGATGCCGTCGGGGTAGCG-GTACTCGAGCCCCTTCGCGATCTCCTT 1321
Query 41102 CTCGAACCAGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCAT-CAGGTTCT 41160
||||||||| | ||| || | || |||||||||||||||||||||| || |
Sbjct 1320 CTCGAACCACGACTGCTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGCATGTAGTTGGC 1261
Query 41161 CGTG--CTCGAACATGCCGGTGGTGTCGACCATCTCGGCGATGTCCAGCGTGGT-CCGCA 41217
|||| |||||| | || || ||| |||||||||| ||||||| | ||||
Sbjct 1260 CGTGGTGTCGAACTCGACGTTG-----CACC-GCTCGGCGATGAGCAGCGTGTTGTCGCA 1207
Query 41218 TCCCCCACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTCAGGT 41277
|| | | | | | ||| | | |||| ||||| || | || ||||||||
Sbjct 1206 GGCC-----TCGGGGTTGTCGCGGAAGAGGT-GCCG-CATCTGCGCCGGCGTCTTCAGGT 1154
Query 41278 AGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTTATCGAGCGTGGTGCCGGTCTGGA 41337
|| || || | | ||||| |||||||| |||| | ||||| | |||| ||| |
Sbjct 1153 AGAACTCGTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGACCCGGACTGCA 1094
Query 41338 CGCACAGCAGTGCATCGTGAGCGAC--CGACTCCTCGGCGGTGACGTAGTGGGAATCGTT 41395
|||| || || || || | ||||| | || | |||| ||||||| |||||
Sbjct 1093 CGCAGAGGAGCGC--CGCGTGCGACTTGGCGTCGTGGGCGTGCGTGTAGTGGAGGTCGTT 1036
Query 41396 CGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCG 41455
|||| | ||| | | || |||||| |||| | || ||| ||| || | || |||
Sbjct 1035 CGTGCCGACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCCCATGATCCG 976
Query 41456 GCGCTCGATCTCGATGCCGTGGTCCATCAGCTCCAGGAAGTACCGGTCACGCCCGAAGAC 41515
|||||||||||||| ||||||||||||| ||| |||||| ||| |||||||
Sbjct 975 GCGCTCGATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTTGCCGAAGAT 916
Query 41516 CTCCAGGTA--CCGACCGGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTCAGCCGG 41573
|| |||| ||| | || |||| | ||||||||||||||| |||||| ||| ||
Sbjct 915 GTCGCGGTAGTCCG--CCGCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCGCAGGCGC 858
Query 41574 GTCATGATCGCACCGCCAGGACATCCGGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCG 41633
||| |||| | || || || || ||||| ||| | |||||||| ||| ||
Sbjct 857 GTCTGGATCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTGGTGTTCCTGC 798
Query 41634 ACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCCTGGTACGACCGCGA 41692
| || |||| ||||||||| || ||| | || | ||||| | ||| | |||
Sbjct 797 AGGAGCTCGATGTCCATGCGGGG---CTTGAAGTAGTA-CCCCTCGAGCGACGCCTTCGA 742
Query 41693 GCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGT 41752
||| | |||||||||| ||||||| ||||| || || ||||| | ||||||
Sbjct 741 CGACAGCCGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCGTCATGTGCGT 682
Query 41753 GTACGCACCCCGACCGCTCACGTCGT-ACCGCTTCTGGTCTTCCGTGCCCCACTGGACTC 41811
||||| |||| |||| |||||||| |||| | ||| |||||| | || |
Sbjct 681 GTACGAACCCGCACCGGACACGTCGTCCCCGCCAC-CGTC------GCCCCAGCGCACAC 629
Query 41812 GCTCCTGGTCGAAGCGG-GAGTCCGGGGC--CATGTACGCCTCGATGCCGATGATCGGCT 41868
| || ||| ||||| | || |||||| |||||||||||| |||||||||||||||
Sbjct 628 GGGTCTTGTCCGAGCGGTGGGTGCGGGGCGTGATGTACGCCTCGGTGCCGATGATCGGCT 569
Query 41869 TGACCCCAGCGGCCTGCGCCGAGGTGAAGAAGTCGTACGCACCGTGAAGGTTGCCGTGGT 41928
|||| || |||||| || | | |||| ||| |||| ||| | |||||||||||
Sbjct 568 TGACGCCGCCGGCCTTGGCGGCCTTCCAGAACTCGAACGCGCCGAACATGTTGCCGTGGT 509
Query 41929 CCGTCACTGCGACGGCAGGAGCACCCTGGCGGGCGACCTCGGCGACCATCTGCTTCATCC 41988
| ||||| || ||||| || |||||| |||| ||| || || | | | |
Sbjct 508 CGGTCACCGCCACGGCGGGCATGCCCTGGGCGGCGGTCTCCGCCACGAGGTCGCCGAGTC 449
Query 41989 GAGCGGCCCCGTCGAGGAGGCTGTACTCGGAGTGGTTGTGCAGGTGGACGAAG 42041
| ||||| |||||||| | ||||||| ||| ||||||||||||||||
Sbjct 448 GTGCGGCACCGTCGAGCATCGAGTACTCGCTGTGCACGTGCAGGTGGACGAAG 396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 164720175682752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |