Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq34693 167 7e-36 seq17497 136 1e-26 seq6714 132 1e-25 seq63299 122 3e-22 seq10592 111 5e-19 seq7277 107 6e-18 seq28855 86.0 2e-11 seq10473 86.0 2e-11 >seq34693 Length=17230 Score = 167 bits (184), Expect = 7e-36 Identities = 291/421 (69%), Gaps = 12/421 (3%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | || ||| || ||||| || || |||||||||||| | Sbjct 2513 TAAAACCATCCATTTCAGTAAGAAGTTGGTTCAGTGTCTGCTCTCTTTCATCATTT---C 2569 Query 288998 CTCTTGAATCACCCGAATC-GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGA 289054 ||| |||| | | | |||| ||| | ||||| ||||||||||| ||||| | Sbjct 2570 CTC------CACCAATACCAGTTCCTCTTTGCCTCCCAACTGCATCAATTTCATCAATAA 2623 Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 |||| | || || ||||||||| |||| | ||||| || || || | || |||| Sbjct 2624 AAATTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTCCCTAACTCTAGAAGCTC 2683 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174 | | ||||||| |||| || | || || || | || | || ||||| || || Sbjct 2684 CCACACCAACAAACATCTCAATGAACTCTGAGCCAGAGAGAGAAAAGAATGGCACCCCTG 2743 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || || | ||| | || || | |||||| ||||| || ||||| || |||| | Sbjct 2744 CTTCTCCGGCAATCGCCTTAGCTAGCAATGTCTTCCCTGTCCCTGGTGGCCCTACTAAGA 2803 Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 ||| ||||||||||| ||||| ||| | | | | ||||| || |||| || || | Sbjct 2804 GAAATCCCTTTGGTATCTTTGCTCCAACTGCAGCAAACTTCTCTGGAGTCTTCAAGAACT 2863 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 | ||||| || | || || | |||||| |||| | ||| || |||||| |||| || | Sbjct 2864 CAACAATCTCTTGAAAATCTTGTTTTGCTTCATTAACTCCAGCCACATCATCAAATGTTA 2923 Query 289355 T 289355 | Sbjct 2924 T 2924 Score = 89.7 bits (98), Expect = 2e-12 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | || ||| || ||||| || || |||||||||||| | Sbjct 2045 TAAAACCATCCATTTCAGTAAGAAGTTGGTTCAGTGTCTGCTCTCTTTCATCATTTCCTC 2104 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| ||| ||| | || ||| ||| | ||||| ||||||||||| ||||| |||| Sbjct 2105 CTCC--AAT-ACCAGT-TC-CTC-TTTGCCTCCCAACTGCATCAATTTCATCAATAAAAA 2158 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | | || || ||||||||| |||| | ||||| || || || | || ||||| | Sbjct 2159 TTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTCCCTAACTCTAGAAGCTCCCA 2218 Query 289118 GACCAACATACATTTC 289133 ||||||| |||| || Sbjct 2219 CACCAACAAACATCTC 2234 >seq17497 Length=22371 Score = 136 bits (150), Expect = 1e-26 Identities = 220/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || || ||||| ||| | ||| || | |||||| || || || ||| ||||| Sbjct 16315 CATGATATCCTCCATGGCCTTCACTAACCGCCTCTGAATGTACCCGGTCTCAGAAGTTTT 16374 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | ||||||||||||||||||||| | ||||| ||| Sbjct 16375 CACAGCAGTATCAATCAGACCTTCTCTACCACCCATAGCATGGAAGAAGAACTCTTGCGG 16434 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || |||| | | | || |||| || |||||||| || || || || Sbjct 16435 GGTCAGTCCCCGGAGATATGAATTCTCCACAAAACCACGACTTTCCGGACCATAATCATC 16494 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 |||||||| || || || || | || | | | | || |||| ||||| ||||| |||| Sbjct 16495 TTTGGTAAAATGAGGAAGAGTACGGTCTATGA-ATCCAAATGGAATACGTTTTCCTTCAA 16553 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | ||||| || |||| || | |||| || || || || | | ||| ||||| || | Sbjct 16554 CATTCTGTTGCCCCACACAAGCGGTCATTTGAGATATGTTGATAAAACTTCCCTTCGACC 16613 Query 302864 CAGCATTTACCATA 302877 ||||| | |||||| Sbjct 16614 CAGCAGTAACCATA 16627 >seq6714 Length=43373 Score = 132 bits (146), Expect = 1e-25 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || ||||| | ||| || || || ||||| ||||| | |||| ||| Sbjct 25975 GGCTATCAGCCCACAGCGCTCACAAACGTGAACTCTGTATGCATCGCTTTGGTCAAATAA 25916 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| ||||| || ||| |||||||| | |||||||||||| |||||||| || || Sbjct 25915 CCGCTCCTTGAGAAAATGAGCAGCACCGTGAGCAATCATACAATCTCGCTCCATCTCTCC 25856 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||||||||||||||||| || | || ||| || |||||||| | ||||| | || Sbjct 25855 AAAACGAAGACCACCATCACGTGACCGACCTTCCGCAGGCTGCCTTGTGAGGATTTGCAC 25796 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||| || || | ||| ||| |||| ||||||||||| || ||||||||| | Sbjct 25795 AGGGCCTCTGCCTCTAGAATGAATCTTGTCATCAACCATATGCTTCAGGCGCTGGTAGTA 25736 Query 251643 TGCGGGACCGATGAAGAT 251660 | |||||| | ||| || Sbjct 25735 CGTGGGACCAAGGAATAT 25718 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 233262 AAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGAC 233321 |||||| | |||||||||||||||||||||||| || ||||| || |||| ||| |||| Sbjct 25903 AAAATGA-GCAGCACCGTGAGCAATCATACAATCTCGCTCCATCTCTCCAAAACGAAGAC 25845 Query 233322 CACCATCATTTGACCTACC 233340 |||||||| ||||| ||| Sbjct 25844 CACCATCACGTGACCGACC 25826 >seq63299 Length=13169 Score = 122 bits (134), Expect = 3e-22 Identities = 287/420 (68%), Gaps = 20/420 (5%) Strand=Plus/Minus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || || | ||| || || || |||||||||||||||||| ||| Sbjct 6851 AAACCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCTCCT 6792 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | ||| | | || ||| ||| ||||||||||||||||| |||| || | Sbjct 6791 CC--AATTCC---AGTCCCTC-TTTGCCGCCCAACAGCATCAATTTCATCAACAAATACA 6738 Query 289060 ACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || |||| ||||| | || | || ||| | || | || || || ||||||| Sbjct 6737 ATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAAGA--TCACGGACTCGAGAGGCTCCAA 6680 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 ||||||| |||| || || ||||| || | || | |||| | |||| ||| ||| Sbjct 6679 CACCAACAAACATCTCAACGAATTCTGAGCCTGAAA-TTGAGAAAAATGGAACACCCGCT 6621 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || | |||| | || || | || || || || ||||| || || | | ||| Sbjct 6620 TCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGA 6561 Query 289237 ACTCCCTTTGG--TACTTTTGCCC-CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 || || ||||| ||| |||| | |||| || || ||||||| |||| |||||| Sbjct 6560 ACACCTTTTGGAATACGAGCGCCCACTGCAG---TAAATCTCTCAGGTTTCTTCAAAAAT 6504 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGT 289352 ||||| | ||| || || | |||||| ||||| ||| || || |||||| |||| || Sbjct 6503 TCTACGACCTCCATAAAATCTTGTTTTGCTTCATCTACA-CCAGCAACATCATCAAATGT 6445 >seq10592 Length=39011 Score = 111 bits (122), Expect = 5e-19 Identities = 323/481 (67%), Gaps = 25/481 (5%) Strand=Plus/Plus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT---AGATTCG 288930 || ||| |||||||||||| | ||| ||||| | || | || ||| | |||| | Sbjct 6167 AAGGCTTTGTCTAATATATCAGGTCTATTTGTGCCAGCAAGTATAACCACGCCAGATGTG 6226 Query 288931 GTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATT--AAGTGTTTGTTCCCTTTC 288986 || || ||| || ||||| || || | |||||| ||||| || || | ||| Sbjct 6227 GTG-GC--AAAACCGTCCAT--TTCAACAAGCAGTTGATTTAAAGTGCTT--TCACGTTC 6279 Query 288987 ATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt--ACCAACAGCATCAATT 289044 ||||| | |||| |||| | || ||| |||| || | ||||| |||||||| Sbjct 6280 ATCATGT---CCTCCTGAAA-AGCCACCTCG-TCCTCTTGCTCGACCAATGGCATCAATC 6334 Query 289045 TCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACA 289104 || ||||||||||| | || || | | || || || |||||| || || Sbjct 6335 TCATCAATGAAAATTATACTTGGTGCACACTGCCTTGCCTCCTGAAATAAGCTCCTAACT 6394 Query 289105 CGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAAT 289164 | || || ||||| |||||| |||| || | ||| || || | || | | || ||| Sbjct 6395 CTGGCTGGTCCAACGCCAACAAACATCTCCATAAAATCTGATCCAGAAA-TAGAGAGAAA 6453 Query 289165 -GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGG 289223 | |||| | || |||||| || | |||||||||||||| || || ||||| || Sbjct 6454 AGGTACACCAGACTCTCCTGCTGTAGCTTTGGCCAGAAGTGTCTTCCCAGTCCCAGGAGG 6513 Query 289224 TCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGC 289282 ||| ||| ||| | |||||||| | ||| || |||| ||| || |||||||| ||| Sbjct 6514 ACCCACTAGAAGAGCACCCTTTGGAATTTTGGCTCCCAACAG-CTCATATTTCTTTGGGT 6572 Query 289283 TCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACAT 289342 | || | || | || | ||| | ||| | ||||||||||||||||| || |||| Sbjct 6573 TTTTAAGGAAGTGGACGAACTCCATGATTTCTTGCTTTGCCTCATCACATCCAGCCACAT 6632 Query 289343 C 289343 | Sbjct 6633 C 6633 >seq7277 Length=17119 Score = 107 bits (118), Expect = 6e-18 Identities = 278/417 (67%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || |||| ||||||| || || || || ||||||||| ||| Sbjct 14153 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCCACCA 14094 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | | || | | | | ||| | || || ||||||||||| || ||||| || | Sbjct 14093 CCA-AGTC--CTGCACCTCTCTGTCTT---CCCACAGCATCAATCTCATCAATAAACACA 14040 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | ||| || | || | |||| | |||| || || || || | || ||||| | | Sbjct 14039 ATACAAGGCGCTTTAGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACA 13980 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 || ||| ||| || ||||| || || || | || || | |||| ||| || || Sbjct 13979 CCCACAAACAACTCAACAAACTCTGATGCTGC-ACAAGAGAAAAATGGCACACCAGCCTC 13921 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || |||||||| || || | ||| ||||| || || || ||||| || | || ||| Sbjct 13920 ACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGGTGGACCAACCAAAAGACA 13861 Query 289239 TCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 || ||||||| || || || ||||| |||| || ||||| | || ||||| || Sbjct 13860 CCCTTTTGGTATCTTAGCACCTAAAGCAG---TATACTTATCAGGATTTTTCAAAAAATC 13804 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | ||||| | || |||| || | |||| || || |||||||||||||| Sbjct 13803 AACCACTTCCTGTAACTCTAATTTAGCTTGATCAGCACCAGCAACATCAGCAAAAGT 13747 >seq28855 Length=35531 Score = 86.0 bits (94), Expect = 2e-11 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || | |||||| | | || || || || |||||||||||| | ||| | || Sbjct 12117 GCCATTAAACCACATTGCTGGCATACGTGAACTCTGTAAGCATCACTTTGATCAAACAGT 12176 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | | || |||| | | || || || | |||||||| ||||| ||||| || || Sbjct 12177 CTCTCTTTAAGGAAGTGTGCAGCTCCATGAGCTATCATACAGTCACGTTCCATCTCCCCA 12236 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || || || || |||||||||| || || || |||||||| | ||||||| | || | Sbjct 12237 AATCGTAGTCCTCCATCGCGAGATCTCCCTTCAGCAGGCTGCCTAGTGAGAATCTGCACA 12296 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||||| | || ||| ||| |||| ||||| ||||| || | ||||||| Sbjct 12297 GGACCACGGCCACGAGAATGGATCTTGTCATCCACCATGTGCTTCAGTCTCTGGTAG 12353 Score = 86.0 bits (94), Expect = 2e-11 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || | |||||| | | || || || || |||||||||||| | ||| | || Sbjct 13477 GCCATTAAACCACATTGCTGGCATACGTGAACTCTGTAAGCATCACTTTGATCAAACAGT 13536 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | | || |||| | | || || || | |||||||| ||||| ||||| || || Sbjct 13537 CTCTCTTTAAGGAAGTGTGCAGCTCCATGAGCTATCATACAGTCACGTTCCATCTCCCCA 13596 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || || || || |||||||||| || || || |||||||| | ||||||| | || | Sbjct 13597 AATCGTAGTCCTCCATCGCGAGATCTCCCTTCAGCAGGCTGCCTAGTGAGAATCTGCACA 13656 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||||| | || ||| ||| |||| ||||| ||||| || | ||||||| Sbjct 13657 GGACCACGGCCACGAGAATGGATCTTGTCATCCACCATGTGCTTCAGTCTCTGGTAG 13713 >seq10473 Length=46604 Score = 86.0 bits (94), Expect = 2e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||||||||| ||| ||||||||||| | | |||| ||| | ||| || | Sbjct 40097 CCGACAGCATCAAGTTCATCAATGAAAATGATTGAAGGAGCATTCTTTCTTGCTACACTG 40038 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||||| | ||| | ||||| |||||| ||||||| ||||||||| ||| Sbjct 40037 AAAAGGTCTCTAATACGAGCAGCTCCTCTTCCAACAAACATTTCAACAAATTCACTAGCA 39978 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || || || | ||| ||||| ||||| || || | || || | || || Sbjct 39977 GAAACAGAAAAAAAGGGTACTCCAGCTTCTCCTGCCACAGCACGAGCTAGTAAGGTTTTT 39918 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 ||||| || ||||| || | | || || || |||||| |||||||| Sbjct 39917 CCTGTCCCTGGTGGACCTACAAGCAGTACACCTCTTGGTAACTTTGCCCC 39868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470617045742768