Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq34693 167 7e-36
seq17497 136 1e-26
seq6714 132 1e-25
seq63299 122 3e-22
seq10592 111 5e-19
seq7277 107 6e-18
seq28855 86.0 2e-11
seq10473 86.0 2e-11
>seq34693
Length=17230
Score = 167 bits (184), Expect = 7e-36
Identities = 291/421 (69%), Gaps = 12/421 (3%)
Strand=Plus/Plus
Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997
|||| |||||||| || | || ||| || ||||| || || |||||||||||| |
Sbjct 2513 TAAAACCATCCATTTCAGTAAGAAGTTGGTTCAGTGTCTGCTCTCTTTCATCATTT---C 2569
Query 288998 CTCTTGAATCACCCGAATC-GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGA 289054
||| |||| | | | |||| ||| | ||||| ||||||||||| ||||| |
Sbjct 2570 CTC------CACCAATACCAGTTCCTCTTTGCCTCCCAACTGCATCAATTTCATCAATAA 2623
Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114
|||| | || || ||||||||| |||| | ||||| || || || | || ||||
Sbjct 2624 AAATTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTCCCTAACTCTAGAAGCTC 2683
Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174
| | ||||||| |||| || | || || || | || | || ||||| || ||
Sbjct 2684 CCACACCAACAAACATCTCAATGAACTCTGAGCCAGAGAGAGAAAAGAATGGCACCCCTG 2743
Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234
|||| || || | ||| | || || | |||||| ||||| || ||||| || |||| |
Sbjct 2744 CTTCTCCGGCAATCGCCTTAGCTAGCAATGTCTTCCCTGTCCCTGGTGGCCCTACTAAGA 2803
Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294
||| ||||||||||| ||||| ||| | | | | ||||| || |||| || || |
Sbjct 2804 GAAATCCCTTTGGTATCTTTGCTCCAACTGCAGCAAACTTCTCTGGAGTCTTCAAGAACT 2863
Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354
| ||||| || | || || | |||||| |||| | ||| || |||||| |||| || |
Sbjct 2864 CAACAATCTCTTGAAAATCTTGTTTTGCTTCATTAACTCCAGCCACATCATCAAATGTTA 2923
Query 289355 T 289355
|
Sbjct 2924 T 2924
Score = 89.7 bits (98), Expect = 2e-12
Identities = 141/196 (72%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997
|||| |||||||| || | || ||| || ||||| || || |||||||||||| |
Sbjct 2045 TAAAACCATCCATTTCAGTAAGAAGTTGGTTCAGTGTCTGCTCTCTTTCATCATTTCCTC 2104
Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057
||| ||| ||| | || ||| ||| | ||||| ||||||||||| ||||| ||||
Sbjct 2105 CTCC--AAT-ACCAGT-TC-CTC-TTTGCCTCCCAACTGCATCAATTTCATCAATAAAAA 2158
Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117
| | || || ||||||||| |||| | ||||| || || || | || ||||| |
Sbjct 2159 TTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTCCCTAACTCTAGAAGCTCCCA 2218
Query 289118 GACCAACATACATTTC 289133
||||||| |||| ||
Sbjct 2219 CACCAACAAACATCTC 2234
>seq17497
Length=22371
Score = 136 bits (150), Expect = 1e-26
Identities = 220/314 (70%), Gaps = 2/314 (1%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||| || || ||||| ||| | ||| || | |||||| || || || ||| |||||
Sbjct 16315 CATGATATCCTCCATGGCCTTCACTAACCGCCTCTGAATGTACCCGGTCTCAGAAGTTTT 16374
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| |||||||| ||||| | | ||||||||||||||||||||| | ||||| |||
Sbjct 16375 CACAGCAGTATCAATCAGACCTTCTCTACCACCCATAGCATGGAAGAAGAACTCTTGCGG 16434
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
|| |||| | | | || |||| || |||||||| || || || ||
Sbjct 16435 GGTCAGTCCCCGGAGATATGAATTCTCCACAAAACCACGACTTTCCGGACCATAATCATC 16494
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803
|||||||| || || || || | || | | | | || |||| ||||| ||||| ||||
Sbjct 16495 TTTGGTAAAATGAGGAAGAGTACGGTCTATGA-ATCCAAATGGAATACGTTTTCCTTCAA 16553
Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863
| ||||| || |||| || | |||| || || || || | | ||| ||||| || |
Sbjct 16554 CATTCTGTTGCCCCACACAAGCGGTCATTTGAGATATGTTGATAAAACTTCCCTTCGACC 16613
Query 302864 CAGCATTTACCATA 302877
||||| | ||||||
Sbjct 16614 CAGCAGTAACCATA 16627
>seq6714
Length=43373
Score = 132 bits (146), Expect = 1e-25
Identities = 184/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
||| || || ||||| | ||| || || || ||||| ||||| | |||| |||
Sbjct 25975 GGCTATCAGCCCACAGCGCTCACAAACGTGAACTCTGTATGCATCGCTTTGGTCAAATAA 25916
Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522
||| ||||| || ||| |||||||| | |||||||||||| |||||||| || ||
Sbjct 25915 CCGCTCCTTGAGAAAATGAGCAGCACCGTGAGCAATCATACAATCTCGCTCCATCTCTCC 25856
Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582
||||||||||||||||| || | || ||| || |||||||| | ||||| | ||
Sbjct 25855 AAAACGAAGACCACCATCACGTGACCGACCTTCCGCAGGCTGCCTTGTGAGGATTTGCAC 25796
Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642
||| || || | ||| ||| |||| ||||||||||| || ||||||||| |
Sbjct 25795 AGGGCCTCTGCCTCTAGAATGAATCTTGTCATCAACCATATGCTTCAGGCGCTGGTAGTA 25736
Query 251643 TGCGGGACCGATGAAGAT 251660
| |||||| | ||| ||
Sbjct 25735 CGTGGGACCAAGGAATAT 25718
Score = 86.0 bits (94), Expect = 2e-11
Identities = 67/79 (85%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 233262 AAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGAC 233321
|||||| | |||||||||||||||||||||||| || ||||| || |||| ||| ||||
Sbjct 25903 AAAATGA-GCAGCACCGTGAGCAATCATACAATCTCGCTCCATCTCTCCAAAACGAAGAC 25845
Query 233322 CACCATCATTTGACCTACC 233340
|||||||| ||||| |||
Sbjct 25844 CACCATCACGTGACCGACC 25826
>seq63299
Length=13169
Score = 122 bits (134), Expect = 3e-22
Identities = 287/420 (68%), Gaps = 20/420 (5%)
Strand=Plus/Minus
Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999
|| |||||||| || || | ||| || || || |||||||||||||||||| |||
Sbjct 6851 AAACCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCTCCT 6792
Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059
| ||| | | || ||| ||| ||||||||||||||||| |||| || |
Sbjct 6791 CC--AATTCC---AGTCCCTC-TTTGCCGCCCAACAGCATCAATTTCATCAACAAATACA 6738
Query 289060 ACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCTCCAA 289117
| || |||| ||||| | || | || ||| | || | || || || |||||||
Sbjct 6737 ATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAAGA--TCACGGACTCGAGAGGCTCCAA 6680
Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176
||||||| |||| || || ||||| || | || | |||| | |||| ||| |||
Sbjct 6679 CACCAACAAACATCTCAACGAATTCTGAGCCTGAAA-TTGAGAAAAATGGAACACCCGCT 6621
Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236
|| || || | |||| | || || | || || || || ||||| || || | | |||
Sbjct 6620 TCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGA 6561
Query 289237 ACTCCCTTTGG--TACTTTTGCCC-CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293
|| || ||||| ||| |||| | |||| || || ||||||| |||| ||||||
Sbjct 6560 ACACCTTTTGGAATACGAGCGCCCACTGCAG---TAAATCTCTCAGGTTTCTTCAAAAAT 6504
Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGT 289352
||||| | ||| || || | |||||| ||||| ||| || || |||||| |||| ||
Sbjct 6503 TCTACGACCTCCATAAAATCTTGTTTTGCTTCATCTACA-CCAGCAACATCATCAAATGT 6445
>seq10592
Length=39011
Score = 111 bits (122), Expect = 5e-19
Identities = 323/481 (67%), Gaps = 25/481 (5%)
Strand=Plus/Plus
Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT---AGATTCG 288930
|| ||| |||||||||||| | ||| ||||| | || | || ||| | |||| |
Sbjct 6167 AAGGCTTTGTCTAATATATCAGGTCTATTTGTGCCAGCAAGTATAACCACGCCAGATGTG 6226
Query 288931 GTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATT--AAGTGTTTGTTCCCTTTC 288986
|| || ||| || ||||| || || | |||||| ||||| || || | |||
Sbjct 6227 GTG-GC--AAAACCGTCCAT--TTCAACAAGCAGTTGATTTAAAGTGCTT--TCACGTTC 6279
Query 288987 ATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt--ACCAACAGCATCAATT 289044
||||| | |||| |||| | || ||| |||| || | ||||| ||||||||
Sbjct 6280 ATCATGT---CCTCCTGAAA-AGCCACCTCG-TCCTCTTGCTCGACCAATGGCATCAATC 6334
Query 289045 TCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACA 289104
|| ||||||||||| | || || | | || || || |||||| || ||
Sbjct 6335 TCATCAATGAAAATTATACTTGGTGCACACTGCCTTGCCTCCTGAAATAAGCTCCTAACT 6394
Query 289105 CGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAAT 289164
| || || ||||| |||||| |||| || | ||| || || | || | | || |||
Sbjct 6395 CTGGCTGGTCCAACGCCAACAAACATCTCCATAAAATCTGATCCAGAAA-TAGAGAGAAA 6453
Query 289165 -GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGG 289223
| |||| | || |||||| || | |||||||||||||| || || ||||| ||
Sbjct 6454 AGGTACACCAGACTCTCCTGCTGTAGCTTTGGCCAGAAGTGTCTTCCCAGTCCCAGGAGG 6513
Query 289224 TCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGC 289282
||| ||| ||| | |||||||| | ||| || |||| ||| || |||||||| |||
Sbjct 6514 ACCCACTAGAAGAGCACCCTTTGGAATTTTGGCTCCCAACAG-CTCATATTTCTTTGGGT 6572
Query 289283 TCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACAT 289342
| || | || | || | ||| | ||| | ||||||||||||||||| || ||||
Sbjct 6573 TTTTAAGGAAGTGGACGAACTCCATGATTTCTTGCTTTGCCTCATCACATCCAGCCACAT 6632
Query 289343 C 289343
|
Sbjct 6633 C 6633
>seq7277
Length=17119
Score = 107 bits (118), Expect = 6e-18
Identities = 278/417 (67%), Gaps = 14/417 (3%)
Strand=Plus/Minus
Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999
|| |||||||| || |||| ||||||| || || || || ||||||||| |||
Sbjct 14153 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCCACCA 14094
Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059
| | || | | | | ||| | || || ||||||||||| || ||||| || |
Sbjct 14093 CCA-AGTC--CTGCACCTCTCTGTCTT---CCCACAGCATCAATCTCATCAATAAACACA 14040
Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119
| ||| || | || | |||| | |||| || || || || | || ||||| | |
Sbjct 14039 ATACAAGGCGCTTTAGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACA 13980
Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178
|| ||| ||| || ||||| || || || | || || | |||| ||| || ||
Sbjct 13979 CCCACAAACAACTCAACAAACTCTGATGCTGC-ACAAGAGAAAAATGGCACACCAGCCTC 13921
Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238
|| |||||||| || || | ||| ||||| || || || ||||| || | || |||
Sbjct 13920 ACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGGTGGACCAACCAAAAGACA 13861
Query 289239 TCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295
|| ||||||| || || || ||||| |||| || ||||| | || ||||| ||
Sbjct 13860 CCCTTTTGGTATCTTAGCACCTAAAGCAG---TATACTTATCAGGATTTTTCAAAAAATC 13804
Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
|| | ||||| | || |||| || | |||| || || ||||||||||||||
Sbjct 13803 AACCACTTCCTGTAACTCTAATTTAGCTTGATCAGCACCAGCAACATCAGCAAAAGT 13747
>seq28855
Length=35531
Score = 86.0 bits (94), Expect = 2e-11
Identities = 161/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463
|| || | |||||| | | || || || || |||||||||||| | ||| | ||
Sbjct 12117 GCCATTAAACCACATTGCTGGCATACGTGAACTCTGTAAGCATCACTTTGATCAAACAGT 12176
Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523
| | || |||| | | || || || | |||||||| ||||| ||||| || ||
Sbjct 12177 CTCTCTTTAAGGAAGTGTGCAGCTCCATGAGCTATCATACAGTCACGTTCCATCTCCCCA 12236
Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583
|| || || || |||||||||| || || || |||||||| | ||||||| | || |
Sbjct 12237 AATCGTAGTCCTCCATCGCGAGATCTCCCTTCAGCAGGCTGCCTAGTGAGAATCTGCACA 12296
Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
||||| | || ||| ||| |||| ||||| ||||| || | |||||||
Sbjct 12297 GGACCACGGCCACGAGAATGGATCTTGTCATCCACCATGTGCTTCAGTCTCTGGTAG 12353
Score = 86.0 bits (94), Expect = 2e-11
Identities = 161/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463
|| || | |||||| | | || || || || |||||||||||| | ||| | ||
Sbjct 13477 GCCATTAAACCACATTGCTGGCATACGTGAACTCTGTAAGCATCACTTTGATCAAACAGT 13536
Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523
| | || |||| | | || || || | |||||||| ||||| ||||| || ||
Sbjct 13537 CTCTCTTTAAGGAAGTGTGCAGCTCCATGAGCTATCATACAGTCACGTTCCATCTCCCCA 13596
Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583
|| || || || |||||||||| || || || |||||||| | ||||||| | || |
Sbjct 13597 AATCGTAGTCCTCCATCGCGAGATCTCCCTTCAGCAGGCTGCCTAGTGAGAATCTGCACA 13656
Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
||||| | || ||| ||| |||| ||||| ||||| || | |||||||
Sbjct 13657 GGACCACGGCCACGAGAATGGATCTTGTCATCCACCATGTGCTTCAGTCTCTGGTAG 13713
>seq10473
Length=46604
Score = 86.0 bits (94), Expect = 2e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|| |||||||||| ||| ||||||||||| | | |||| ||| | ||| || |
Sbjct 40097 CCGACAGCATCAAGTTCATCAATGAAAATGATTGAAGGAGCATTCTTTCTTGCTACACTG 40038
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|| | ||||| | ||| | ||||| |||||| ||||||| ||||||||| |||
Sbjct 40037 AAAAGGTCTCTAATACGAGCAGCTCCTCTTCCAACAAACATTTCAACAAATTCACTAGCA 39978
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
|| || || || | ||| ||||| ||||| || || | || || | || ||
Sbjct 39977 GAAACAGAAAAAAAGGGTACTCCAGCTTCTCCTGCCACAGCACGAGCTAGTAAGGTTTTT 39918
Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259
||||| || ||||| || | | || || || |||||| ||||||||
Sbjct 39917 CCTGTCCCTGGTGGACCTACAAGCAGTACACCTCTTGGTAACTTTGCCCC 39868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1470617045742768
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