Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_021339.1
Length=51077
Score E
Sequences producing significant alignments: (Bits) Value
seq61823 1119 0.0
>seq61823
Length=3776
Score = 1119 bits (1240), Expect = 0.0
Identities = 1758/2479 (71%), Gaps = 67/2479 (3%)
Strand=Plus/Minus
Query 38786 GTCGAAGGCACCGGCCTTGATCAGGGACTCGATGGCTCGCTTGCTCACCGTCGCCTGAGT 38845
|||||| || |||||||||||||| ||||||| | |||||| || ||| || || |
Sbjct 3093 GTCGAACGCGCCGGCCTTGATCAGCGACTCGACCGTGCGCTTGTTCGCCGACGA--GA-T 3037
Query 38846 CGCTGCCTTC---AGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCT-TCCCGGAGTT 38901
|| |||| |||||||| | | || |||| ||| | | | || ||
Sbjct 3036 CGGGATCTTCCGCAGGAAGTCGTGGAACGACTCGAACGCGCCCTTCTCGGTGCGGGCCTT 2977
Query 38902 CAGCGATCTCCGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGA 38961
|| |||| || |||||| | ||| ||||| | ||| || ||||||||||
Sbjct 2976 CA-CGATGTCGTCGACCACGTTGAAGCCGACGTTGCGGATCGCGCCCATACCGAAGCGGA 2918
Query 38962 TCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGACCGACACGTCGGGCGGCAGGA 39021
| |||| | ||| || | ||| | | | |||| | ||||| ||||||| ||
Sbjct 2917 TGTCGT---CACCGACGGCCGCGAAGAACCCGATCGACTCGTTGACGTCCGGCGGCATGA 2861
Query 39022 CCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGC 39081
|| | ||||||||| || |||| ||||||| ||||| ||||| | |||| |
Sbjct 2860 CCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGCTTGTCGCGGGCGTCAC 2801
Query 39082 CCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCG 39141
| || ||||| ||| || ||||||||||||||||||||||||| ||| | |||| |
Sbjct 2800 CGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTACGCGG 2741
Query 39142 TGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGA 39201
| | | ||| || | ||||||||||||||||||||||||||||| |||||| | | ||
Sbjct 2740 TCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTGAACGCGTAGTCGGAGA 2681
Query 39202 AGGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCG 39261
| || | ||| | |||||||| | || ||| ||| || |||||||||| || ||
Sbjct 2680 ACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAGTAGCCGTTGTCCTGCA 2621
Query 39262 CTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTT---GCCCA 39318
||||||| |||| || ||| |||| |||| ||||| ||||||||| |||||
Sbjct 2620 TGCCCTTCTCGAAGCCGGCGTACTGCTTGTCCAG---CTCGGACTTCTTCTTCTTGCCCA 2564
Query 39319 TCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCT 39378
| || ||||| || | ||| ||||| || |||| | ||||||| | ||| || |
Sbjct 2563 TGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCGACCTTCTGCGCGATGG 2504
Query 39379 TCTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGG 39438
| |||||||||||||||||||||| | | |||| | | | ||| ||| ||||
Sbjct 2503 CCATGACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTGCCGATGATGTCCTTGAGGG 2444
Query 39439 ACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGT 39498
||| | | ||| ||||||||||||||||||| ||||| |||||||| || || ||||
Sbjct 2443 GCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCGCCGTTCTTGCGCAGCGCGT 2384
Query 39499 AGTTCGTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGA 39558
|||||||||| || | | |||||||| |||||||||||||| |||| || || ||||
Sbjct 2383 AGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTACAGGGCGATGAGCGCGGAGA 2324
Query 39559 TGTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGA 39618
|||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||
Sbjct 2323 TGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCGCGCATCGGGCCGCCGTCGA 2264
Query 39619 GCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCA 39678
||||||| || || |||||||| | ||| ||| |||| | | || ||| || |
Sbjct 2263 GCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCGTACGCCTCGGGGTCCTCGA 2204
Query 39679 GAGGGATGTTCTCCAGGTCGACGT-GCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCG 39737
| ||| |||| ||||||| || | ||||| ||||| |||||| |||| |||
Sbjct 2203 GCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTTCGTCTTGATGTTGTCGAGGGCG 2145
Query 39738 TCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCC 39797
|| | ||||||||||||||||||||||| |||||||||||||| | |||||| || | |
Sbjct 2144 TCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGCGAC 2085
Query 39798 TC-GCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACAC 39856
|| || || |||||||||||||||||||| || |||||||||| ||| | |
Sbjct 2084 TCCGCTGC-CGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCCCGCTTCATGAT 2026
Query 39857 CGGGATGTGGTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCAT 39916
||||||| ||||| ||| || ||| |||||||| || ||||| ||||||||||||
Sbjct 2025 CGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCGGCCGCGTGCACACCCCA 1966
Query 39917 CTGCCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTC 39976
||| || || || ||||| |||||||||||||||| ||| ||| || || |||||
Sbjct 1965 CTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACACCGTCTTCGCCTCGGGGTC 1906
Query 39977 GGAGCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAA 40036
|| || || |||| ||| |||| |||| | | || ||||| || || |||
Sbjct 1905 GGTCTCGACGACCGTGCGGACGTCGACGGCTTCCTTGAAGCGGGGGTGGTCCTTGTCGAA 1846
Query 40037 GATGCCTTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTT 40096
||| || ||| || || |||||||||||| | ||| ||||||||| |||||
Sbjct 1845 GATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCGGCATCGCCTTGGTGAGCTT 1786
Query 40097 CTCGCCGACCTGGAAGGGCTTGTCGAGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGC 40156
|||||| | ||| || | |||| ||||| | | |||||||| ||| | |||
Sbjct 1785 CTCGCCCATGCCGAACGGGAAGCCGAGGACGCGCGAGGAGTCCTTCAGCGCCTGCTTCGC 1726
Query 40157 CTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGAC 40216
||||||| |||||||| |||||||||| || || | |||||||||| ||||||
Sbjct 1725 CTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCGACCCGTACTTCTCGGTGAC 1666
Query 40217 GTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGA 40276
||||| ||| |||| || || |||||||| |||||||||| ||||| |||||||| ||
Sbjct 1665 GTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGA 1606
Query 40277 CACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTC 40336
||||| || ||||| ||||| ||||||||||| ||||||||| | ||||||||||||
Sbjct 1605 GACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCCGGATCGGGTCGAGGTC 1546
Query 40337 GGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGAC 40396
|||||| | | |||| || |||| ||||||||| | || || || || ||||||||
Sbjct 1545 GGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGGAACCACGACCCGGGCCGAC 1486
Query 40397 CCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGG 40456
| || ||||| | ||||| |||| ||||||||| ||||| || |||||||| |||
Sbjct 1485 ACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGACCACCAGGAAGTAGCCCGG 1426
Query 40457 GAACCCCATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGCTTGCCGTGCTCGTAGT 40515
||| ||||||||| |||| || | ||||||| | || || ||| | ||| | | |
Sbjct 1425 GAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGCGC-GCT---CCTGCACCTCGG 1370
Query 40516 CCG---TGCCGTTCGGGTACCG--ACGACGGGCACC-TCGATGGACCTCGTCCTCGAACC 40569
|| |||||| ||||| || || || || || ||| || ||| | ||||||||
Sbjct 1369 GCGTGATGCCGTCGGGGTAGCGGTAC-TCGAGCCCCTTCG--CGATCTCCTTCTCGAACC 1313
Query 40570 AGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCAT-CAGGTTCTCGTG--CT 40626
| | ||| || | || |||||||||||||||||||||| || | |||| |
Sbjct 1312 ACGACTGCTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGCATGTAGTTGGCCGTGGTGT 1253
Query 40627 CGAACATGCCCGTGGTGTCGACCATCTCGGCGATCTCCAGCGTGGTCT-TCATGCCCCAC 40685
||||| | | || | | ||||||||| ||||||| | | || | || |
Sbjct 1252 CGAACTCGAC------GTTGCACCGCTCGGCGATGAGCAGCGTGTTGTCGCAGG--CCTC 1201
Query 40686 TGCCAGATCGGCGAAGAGTCGATCGCCGCCATCT-CTTCGGCGGACTTCAGGTAGTACCC 40744
| ||| |||||| |||| ||||| | |||| | |||||||||| || |
Sbjct 1200 GGGGTTGTCGCGGAAGAG----GTGCCG-CATCTGCGCCGGC-GTCTTCAGGTAGAACTC 1147
Query 40745 GGAGCCCTCGAAGCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCACAG 40804
| | | ||||| |||||||||||||| || ||||| | |||| ||| ||||| ||
Sbjct 1146 GTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGACCCGGACTGCACGCAGAG 1087
Query 40805 CAGTGCATCGTGAGCGAC--CGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACC 40862
|| || || | ||||| | || | |||| ||||||| ||||||||| |
Sbjct 1086 GAGCGC--CGCGTGCGACTTGGCGTCGTGGGCGTGCGTGTAGTGGAGGTCGTTCGTGCCG 1029
Query 40863 ACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGGTCGTCACGGACCCGGCGCTCG 40922
||| | | || |||||| |||| | || ||| ||||||| | || ||||||||||
Sbjct 1028 ACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCCCATGATCCGGCGCTCG 969
Query 40923 ATCTCGATGTCGTGGTCCATGAGTTCGAGCAGGTACCGGTCACGCCCGAAGACCTCCAGG 40982
||||||| |||||||||| | ||| | ||| ||| ||||||| || ||
Sbjct 968 ATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTTGCCGAAGATGTCGCGG 909
Query 40983 TA--CCGACCAGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGA 41040
|| ||| | || |||| | ||||||||||||||| |||||| || || ||| ||
Sbjct 908 TAGTCCG--CCGCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCGCAGGCGCGTCTGGA 851
Query 41041 TCGCACCGCCAGGGCAGCCAGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCGACCAGCT 41100
|| | || |||||||| ||||| ||| | |||||||| ||| || | ||||
Sbjct 850 TCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTGGTGTTCCTGCAGGAGCT 791
Query 41101 CGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCCTGGTACGACCGAGAGCTGAGC 41159
||| ||||||||| || ||| | || | ||||| | ||| | || |||
Sbjct 790 CGATGTCCATGCGGGG---CTTGAAGTAGTA-CCCCTCGAGCGACGCCTTCGACGACAGC 735
Query 41160 TTCATGAGGTTGTGGAGCCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCG 41219
| |||||||| | |||||| ||||| || || ||||| | |||||||||||
Sbjct 734 CGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCGTCATGTGCGTGTACGAA 675
Query 41220 CCGTTGCCCGACACGTCGT 41238
|| || ||||||||||
Sbjct 674 CCCGCACCGGACACGTCGT 656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163201324817952
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