Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq61823 1119 0.0 >seq61823 Length=3776 Score = 1119 bits (1240), Expect = 0.0 Identities = 1758/2479 (71%), Gaps = 67/2479 (3%) Strand=Plus/Minus Query 38786 GTCGAAGGCACCGGCCTTGATCAGGGACTCGATGGCTCGCTTGCTCACCGTCGCCTGAGT 38845 |||||| || |||||||||||||| ||||||| | |||||| || ||| || || | Sbjct 3093 GTCGAACGCGCCGGCCTTGATCAGCGACTCGACCGTGCGCTTGTTCGCCGACGA--GA-T 3037 Query 38846 CGCTGCCTTC---AGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCT-TCCCGGAGTT 38901 || |||| |||||||| | | || |||| ||| | | | || || Sbjct 3036 CGGGATCTTCCGCAGGAAGTCGTGGAACGACTCGAACGCGCCCTTCTCGGTGCGGGCCTT 2977 Query 38902 CAGCGATCTCCGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGA 38961 || |||| || |||||| | ||| ||||| | ||| || |||||||||| Sbjct 2976 CA-CGATGTCGTCGACCACGTTGAAGCCGACGTTGCGGATCGCGCCCATACCGAAGCGGA 2918 Query 38962 TCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGACCGACACGTCGGGCGGCAGGA 39021 | |||| | ||| || | ||| | | | |||| | ||||| ||||||| || Sbjct 2917 TGTCGT---CACCGACGGCCGCGAAGAACCCGATCGACTCGTTGACGTCCGGCGGCATGA 2861 Query 39022 CCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGC 39081 || | ||||||||| || |||| ||||||| ||||| ||||| | |||| | Sbjct 2860 CCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGCTTGTCGCGGGCGTCAC 2801 Query 39082 CCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCG 39141 | || ||||| ||| || ||||||||||||||||||||||||| ||| | |||| | Sbjct 2800 CGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTACGCGG 2741 Query 39142 TGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGA 39201 | | | ||| || | ||||||||||||||||||||||||||||| |||||| | | || Sbjct 2740 TCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTGAACGCGTAGTCGGAGA 2681 Query 39202 AGGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCG 39261 | || | ||| | |||||||| | || ||| ||| || |||||||||| || || Sbjct 2680 ACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAGTAGCCGTTGTCCTGCA 2621 Query 39262 CTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTT---GCCCA 39318 ||||||| |||| || ||| |||| |||| ||||| ||||||||| ||||| Sbjct 2620 TGCCCTTCTCGAAGCCGGCGTACTGCTTGTCCAG---CTCGGACTTCTTCTTCTTGCCCA 2564 Query 39319 TCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCT 39378 | || ||||| || | ||| ||||| || |||| | ||||||| | ||| || | Sbjct 2563 TGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCGACCTTCTGCGCGATGG 2504 Query 39379 TCTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGG 39438 | |||||||||||||||||||||| | | |||| | | | ||| ||| |||| Sbjct 2503 CCATGACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTGCCGATGATGTCCTTGAGGG 2444 Query 39439 ACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGT 39498 ||| | | ||| ||||||||||||||||||| ||||| |||||||| || || |||| Sbjct 2443 GCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCGCCGTTCTTGCGCAGCGCGT 2384 Query 39499 AGTTCGTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGA 39558 |||||||||| || | | |||||||| |||||||||||||| |||| || || |||| Sbjct 2383 AGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTACAGGGCGATGAGCGCGGAGA 2324 Query 39559 TGTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGA 39618 |||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| Sbjct 2323 TGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCGCGCATCGGGCCGCCGTCGA 2264 Query 39619 GCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCA 39678 ||||||| || || |||||||| | ||| ||| |||| | | || ||| || | Sbjct 2263 GCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCGTACGCCTCGGGGTCCTCGA 2204 Query 39679 GAGGGATGTTCTCCAGGTCGACGT-GCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCG 39737 | ||| |||| ||||||| || | ||||| ||||| |||||| |||| ||| Sbjct 2203 GCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTTCGTCTTGATGTTGTCGAGGGCG 2145 Query 39738 TCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCC 39797 || | ||||||||||||||||||||||| |||||||||||||| | |||||| || | | Sbjct 2144 TCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGCGAC 2085 Query 39798 TC-GCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACAC 39856 || || || |||||||||||||||||||| || |||||||||| ||| | | Sbjct 2084 TCCGCTGC-CGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCCCGCTTCATGAT 2026 Query 39857 CGGGATGTGGTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCAT 39916 ||||||| ||||| ||| || ||| |||||||| || ||||| |||||||||||| Sbjct 2025 CGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCGGCCGCGTGCACACCCCA 1966 Query 39917 CTGCCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTC 39976 ||| || || || ||||| |||||||||||||||| ||| ||| || || ||||| Sbjct 1965 CTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACACCGTCTTCGCCTCGGGGTC 1906 Query 39977 GGAGCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAA 40036 || || || |||| ||| |||| |||| | | || ||||| || || ||| Sbjct 1905 GGTCTCGACGACCGTGCGGACGTCGACGGCTTCCTTGAAGCGGGGGTGGTCCTTGTCGAA 1846 Query 40037 GATGCCTTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTT 40096 ||| || ||| || || |||||||||||| | ||| ||||||||| ||||| Sbjct 1845 GATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCGGCATCGCCTTGGTGAGCTT 1786 Query 40097 CTCGCCGACCTGGAAGGGCTTGTCGAGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGC 40156 |||||| | ||| || | |||| ||||| | | |||||||| ||| | ||| Sbjct 1785 CTCGCCCATGCCGAACGGGAAGCCGAGGACGCGCGAGGAGTCCTTCAGCGCCTGCTTCGC 1726 Query 40157 CTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGAC 40216 ||||||| |||||||| |||||||||| || || | |||||||||| |||||| Sbjct 1725 CTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCGACCCGTACTTCTCGGTGAC 1666 Query 40217 GTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGA 40276 ||||| ||| |||| || || |||||||| |||||||||| ||||| |||||||| || Sbjct 1665 GTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGA 1606 Query 40277 CACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTC 40336 ||||| || ||||| ||||| ||||||||||| ||||||||| | |||||||||||| Sbjct 1605 GACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCCGGATCGGGTCGAGGTC 1546 Query 40337 GGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGAC 40396 |||||| | | |||| || |||| ||||||||| | || || || || |||||||| Sbjct 1545 GGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGGAACCACGACCCGGGCCGAC 1486 Query 40397 CCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGG 40456 | || ||||| | ||||| |||| ||||||||| ||||| || |||||||| ||| Sbjct 1485 ACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGACCACCAGGAAGTAGCCCGG 1426 Query 40457 GAACCCCATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGCTTGCCGTGCTCGTAGT 40515 ||| ||||||||| |||| || | ||||||| | || || ||| | ||| | | | Sbjct 1425 GAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGCGC-GCT---CCTGCACCTCGG 1370 Query 40516 CCG---TGCCGTTCGGGTACCG--ACGACGGGCACC-TCGATGGACCTCGTCCTCGAACC 40569 || |||||| ||||| || || || || || ||| || ||| | |||||||| Sbjct 1369 GCGTGATGCCGTCGGGGTAGCGGTAC-TCGAGCCCCTTCG--CGATCTCCTTCTCGAACC 1313 Query 40570 AGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCAT-CAGGTTCTCGTG--CT 40626 | | ||| || | || |||||||||||||||||||||| || | |||| | Sbjct 1312 ACGACTGCTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGCATGTAGTTGGCCGTGGTGT 1253 Query 40627 CGAACATGCCCGTGGTGTCGACCATCTCGGCGATCTCCAGCGTGGTCT-TCATGCCCCAC 40685 ||||| | | || | | ||||||||| ||||||| | | || | || | Sbjct 1252 CGAACTCGAC------GTTGCACCGCTCGGCGATGAGCAGCGTGTTGTCGCAGG--CCTC 1201 Query 40686 TGCCAGATCGGCGAAGAGTCGATCGCCGCCATCT-CTTCGGCGGACTTCAGGTAGTACCC 40744 | ||| |||||| |||| ||||| | |||| | |||||||||| || | Sbjct 1200 GGGGTTGTCGCGGAAGAG----GTGCCG-CATCTGCGCCGGC-GTCTTCAGGTAGAACTC 1147 Query 40745 GGAGCCCTCGAAGCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCACAG 40804 | | | ||||| |||||||||||||| || ||||| | |||| ||| ||||| || Sbjct 1146 GTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGACCCGGACTGCACGCAGAG 1087 Query 40805 CAGTGCATCGTGAGCGAC--CGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACC 40862 || || || | ||||| | || | |||| ||||||| ||||||||| | Sbjct 1086 GAGCGC--CGCGTGCGACTTGGCGTCGTGGGCGTGCGTGTAGTGGAGGTCGTTCGTGCCG 1029 Query 40863 ACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGGTCGTCACGGACCCGGCGCTCG 40922 ||| | | || |||||| |||| | || ||| ||||||| | || |||||||||| Sbjct 1028 ACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCCCATGATCCGGCGCTCG 969 Query 40923 ATCTCGATGTCGTGGTCCATGAGTTCGAGCAGGTACCGGTCACGCCCGAAGACCTCCAGG 40982 ||||||| |||||||||| | ||| | ||| ||| ||||||| || || Sbjct 968 ATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTTGCCGAAGATGTCGCGG 909 Query 40983 TA--CCGACCAGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGA 41040 || ||| | || |||| | ||||||||||||||| |||||| || || ||| || Sbjct 908 TAGTCCG--CCGCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCGCAGGCGCGTCTGGA 851 Query 41041 TCGCACCGCCAGGGCAGCCAGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCGACCAGCT 41100 || | || |||||||| ||||| ||| | |||||||| ||| || | |||| Sbjct 850 TCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTGGTGTTCCTGCAGGAGCT 791 Query 41101 CGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCCTGGTACGACCGAGAGCTGAGC 41159 ||| ||||||||| || ||| | || | ||||| | ||| | || ||| Sbjct 790 CGATGTCCATGCGGGG---CTTGAAGTAGTA-CCCCTCGAGCGACGCCTTCGACGACAGC 735 Query 41160 TTCATGAGGTTGTGGAGCCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCG 41219 | |||||||| | |||||| ||||| || || ||||| | ||||||||||| Sbjct 734 CGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCGTCATGTGCGTGTACGAA 675 Query 41220 CCGTTGCCCGACACGTCGT 41238 || || |||||||||| Sbjct 674 CCCGCACCGGACACGTCGT 656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163201324817952