Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq61823 107 2e-18 >seq61823 Length=3776 Score = 107 bits (118), Expect = 2e-18 Identities = 190/274 (69%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 105014 CCGCACCATCA-CCAGCAAGAACTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCA 105072 ||| | ||||| |||| | | |||| | || |||||| || |||||||||| || || Sbjct 1401 CCGGATCATCAACCAG-ATGGGCTTCCCGGGCTACTTCCTGGTGGTCGCCGACTTCATCA 1459 Query 105073 AGTGGGCTAAGGACC---GCATGCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGC 105129 | ||| | ||| || |||| | ||||| || || |||||||| | | || ||| Sbjct 1460 ACTGGTCGAAGAACAACGGCATCCGTGTCGGCCCGGGTCGTGGTTCCGGTGCCGGTTCGA 1519 Query 105130 TCGTCTCGTACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCG 105189 | || ||||| |||| ||||||||| |||||||||||| | ||| ||||| |||| Sbjct 1520 TGGTGGCGTACGCGATGCGCATCACCGACCTCGACCCGATCCGGCACGGGCTGATCTTCG 1579 Query 105190 AGCGGTTCATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGA 105249 |||||||| || ||||| || | |||||| |||| |||||||| | Sbjct 1580 AGCGGTTCCTCAACCCGGACCGCGTCTCGATGCCCGACTTCGACGTCGACTTCGACGACC 1639 Query 105250 AGCGTCGCGGCGAGGTCGTCGACTACATCGCCGA 105283 ||| ||||| |||| || | ||| || |||| Sbjct 1640 GGCGCCGCGGTGAGGCGATCAAGTACGTCACCGA 1673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455710656629120