Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq59251 113 6e-19 seq6171 102 1e-15 seq44930 96.9 4e-14 >seq59251 Length=2102 Score = 113 bits (124), Expect = 6e-19 Identities = 240/346 (69%), Gaps = 17/346 (5%) Strand=Plus/Minus Query 96653 TGCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGCGC-GC 96711 ||| |||||| | |||||||||||||||||||| ||||||||| | | | || | || Sbjct 1461 TGCGGAGAACGTGATGATCGTCGACCTGGTGCGGAACGACCTGCT-GCGGACGGCACTGC 1403 Query 96712 CCGGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTGC 96771 | || ||| ||| || ||||| ||| | || | ||||| ||||| ||||| Sbjct 1402 CGGGGTCCGTGCACGT--CGACCGGCT--CTGC-GACG-TCGAGACGTACGCGAGCGTGC 1349 Query 96772 ACCAGATGGTGACCACCGTCGACGGCCTGCTCGACCGCGGCCGGACGGCGC---TCGACC 96828 ||||||||||| |||| ||| | | |||| | | |||| |||| ||| ||| Sbjct 1348 ACCAGATGGTGTCCACGATCGGTGCCGTGCT-GCCGGCGG--GGACCTCGCGGGCGGACG 1292 Query 96829 TCGTGCGCGCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAGGCGCGCAGCATGG 96888 | ||||| ||||| |||||||| || |||||||| || ||||| ||| || |||| Sbjct 1291 TGGTGCGGGCGGCGTTTCCGCCCGGGTCGATGACCGGGGCGCCGAAGATCCGGGCGATGG 1232 Query 96889 AGATTCTCGATCGCCTCGAGAAGCACCGCCCGCGCGGGATCTACTCGGGCGCGCTGGGCt 96948 ||| || || ||| |||| || ||||||||| | |||||||| | | | || | Sbjct 1231 CGATCGCGGACCGGCTC--GAAGGGGCG-CCGCGCGGGGTGTACTCGGGGGTGATCGGGT 1175 Query 96949 ttttttCGGCCGACGGCGCCTGCAGCCTGTCGGTGGTGATCCGCAC 96994 || ||||| ||| | | |||||||||| |||||||| Sbjct 1174 ACTTCTCGGCGAGCGGTTCGGTCGATCTGTCGGTGGCCATCCGCAC 1129 >seq6171 Length=36435 Score = 102 bits (112), Expect = 1e-15 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| |||||||| ||||| || || || || | | |||| || || ||| Sbjct 4665 GAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGG 4606 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| || || |||||||| ||||||||||| |||||| ||| Sbjct 4605 ACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAA 4546 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTG 869778 || || || || || |||| || || Sbjct 4545 AAGGCAAGCACATGAGTGATGAAATG 4520 >seq44930 Length=12351 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| |||||| ||||| || || ||||||| || Sbjct 1388 GCGGCTAACTACCTGAACATCAAGAGTCTGCTTGATCTGACCTGTCAGACTGTGGCAGAC 1329 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||| || ||| | || |||||||| ||||||||||| ||||||||| Sbjct 1328 ATGATCAAAGGAAAGACCCCAGAGGAGATTCGCAAGACCTTCAACATCAAG 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101914634021488