Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq16715 107 2e-18 seq32996 89.7 4e-13 seq3506 87.8 1e-12 >seq16715 Length=90750 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329 |||||||| ||||||||||| || || ||||| || |||||| |||| || ||| || Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCTCT 54280 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| |||||||| ||| | || || Sbjct 54279 GAC---ACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGAC 54223 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| | |||| ||| ||||| ||| |||| |||| || ||| |||| |||||| Sbjct 54222 CAGCAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTAC 54163 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 || ||||| || ||||| || | || | ||||| || || Sbjct 54162 AATATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCT 54122 >seq32996 Length=3898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| || || || || || || || ||||| | || ||| | Sbjct 1544 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1485 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | | || ||| ||||| ||||| || || | || || || Sbjct 1484 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 1425 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || || || || ||||||| || || |||||||||||||| Sbjct 1424 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 1365 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 ||||| |||||||| || ||||| Sbjct 1364 ATTCAGAAAGAATCAACCCTGCAC 1341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| || || || || ||||| | || ||| | Sbjct 1316 ATGCAAATTTTTGTCAAGACTTTGACGGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1257 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| || || || || | ||| || || Sbjct 1256 GATACCATTGACAACGTCAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGACCAG 1197 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || || || || ||||||| || || |||| ||||||||| Sbjct 1196 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCAGATTACAAC 1137 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 ||||| |||||||| || ||||| Sbjct 1136 ATTCAGAAAGAATCAACCCTGCAC 1113 >seq3506 Length=94386 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCC 110328 |||||||| ||||| || |||||| | ||| | |||||||||| | ||| || | | Sbjct 52390 AAAATGCAGATATTCGTGAAAACTCTGACCAGTTAAACCATTACTCTGGAAGTCGAATTC 52449 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | | ||||| ||| | | | || ||||| ||||||||||| | | || Sbjct 52450 AG-CAATACTATCGACAATGCTAAGGCCAAGATACAAGACAAAGAAGGAATCCTTCCAGA 52508 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || ||||| || |||| ||| ||||| ||||| ||||||| | || ||||||| || Sbjct 52509 CCAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTCGAGGATGGCCACACCTTGGCGGACTA 52568 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 |||||| || ||| |||| || | || | ||| |||| || Sbjct 52569 CAACATCCAGAAAAAATCAACTCTACATCTAGTGCTAAGGCT 52610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412521274138352