Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_022052.1 Length=76050 Score E Sequences producing significant alignments: (Bits) Value seq62752 179 2e-40 seq63545 89.7 2e-13 seq63415 84.2 1e-11 >seq62752 Length=6345 Score = 179 bits (198), Expect = 2e-40 Identities = 502/749 (67%), Gaps = 35/749 (5%) Strand=Plus/Minus Query 51051 CCGTTCTTTGACGCTGACGAGGACGAGGTTGCCTCGCTGTACGAGGAACGCGTTACGCAG 51110 |||||||| | ||| |||||||||||||| ||| |||| ||| | | ||| | | | Sbjct 2953 CCGTTCTTCGCCGCCGACGAGGACGAGGTCGCCGGCCTGTTCGA-GCAGGCGCTCCAGGG 2895 Query 51111 ATTC-TCGGGCCTAACACGATTGGCTCCGGCCATATCCGCAAGCTGCACCGGCTGGGCTA 51169 | | |||| || ||| || ||| ||| ||| ||||| |||||||| |||||||| Sbjct 2894 CTACTTCGGCCCGAACCACATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTA 2835 Query 51170 TCTGCCGCTGCGGTTCTGCGCGGTGCCTGAGGGGACGATGGTTCCTATCGGCGTGCCCAG 51229 |||||||| | || ||||| |||| ||||| || | | ||| |||||||| ||| Sbjct 2834 CCTGCCGCTCGAGATCCGCGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCAC 2775 Query 51230 CTTCACCGTGGAGAACACGGACCCGGAGTTCTACTGGCTGACCAACTACGTCGAGACCGG 51289 | | || || |||||||| | | ||||||| ||||||| | |||||| |||||||| | Sbjct 2774 CCTGACGGTCGAGAACACCGTCGACGAGTTCTTCTGGCTGCCGAACTACATCGAGACC-G 2716 Query 51290 CATTAGC-GCGGGCGTCTGGCAGGCCAGCACTAGCGCGACCATCGCTAAGGAATACCGGC 51348 || | | ||| ||||||| || || ||| || | || || ||||| Sbjct 2715 CACTGTCTGCGTCGATCTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTACCGCG 2656 Query 51349 GCGTGATGATGGACGCGGCGCGGCTTACCGGCTCGGA-CCTGATCG-GCGTTGACTGGCA 51406 | | ||| |||| ||| | ||||| | || || | || || | |||| Sbjct 2655 ACCTCATGGAGGACTGGGCCGCCCGCACCGGTGCAGATCCCG--CGAGCATCGACTTCGC 2598 Query 51407 GGTCCACGACTTCTCTTACCG-GGGCATGTCCTCGCAT-GA---GAGCGCGGCTGTCTCG 51461 | |||||||||||| | ||| ||||| || | |||| || | |||||| | | Sbjct 2597 CGCCCACGACTTCTCGTTCCGCGGGCA-GT-CGAGCATCGAGTCGGCCGCGGCGGGC--- 2543 Query 51462 GGTGCGGCTCACCTGTTGAGCTTCACCGGGACGGACTCGCTGGTGTCGCTTGAGTGGATC 51521 ||||| | |||||| | ||| ||| || |||||| || || || || | ||| Sbjct 2542 GGTGCCGGACACCTGCTCTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATC 2483 Query 51522 GACCGCTACTACGGCGGCGAGTACATCGCCGGGTCG--------GTCCCCGCTACGGAGC 51573 |||||||||||| |||||| || || |||| | |||||||| || |||| Sbjct 2482 GACCGCTACTACCCCGGCGACAAC--GGCTGGGTGGCGGCGAGCGTCCCCGCGACCGAGC 2425 Query 51574 ACTCGGTGATGTGTACCGGCATTGAGACGGTGGGCGAGCTTGAGACGTTCCAGCGGCT-C 51632 || || ||||| || | | | | |||||||| ||||| ||| || | | | Sbjct 2424 ACAGCGTCATGTG---CGTCCGCGGCGCCGACGGCGAGCTGGAGACCTTCGCGCAGATCC 2368 Query 51633 TTGTCGCTGTACCCGGACGGG-ATCGTTAGCGTCGTTAGCGACACCTTCGACCTGTGGCG 51691 | | || ||||||| |||||| ||||| | || |||||| ||||||||||| Sbjct 2367 TCGACG-TGTACCC-GACGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGACCTGTTCAA 2310 Query 51692 CGTCCTGTGGGAGTACCTGCCGACGTTGCAGAAACAGATTCTCGCCCGCAACGGCAAGCT 51751 ||||| ||| || ||| | | || | | || ||||||| |||||||||| Sbjct 2309 GGTCCTCACCGAGACGCTCCCGCAGCTCAAGGACCGCATCACCGCCCGCGACGGCAAGCT 2250 Query 51752 GGTGATCCGGCCTGACTCGGGCGATCCGG 51780 || ||||| || ||||||||||| |||| Sbjct 2249 CGTCATCCGTCCGGACTCGGGCGACCCGG 2221 >seq63545 Length=90175 Score = 89.7 bits (98), Expect = 2e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 55441 GGGCAACCTCACCGCTGATCCGGAACTGAGGTTCTTGGACTCTGGCGTGGCGGTCGCTCA 55500 ||||||||||||||| || ||||| ||| | | | | | || | || || || | Sbjct 74067 GGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCGAA 74008 Query 55501 GTTCTCGGTGGCGTCTACTCCCCGCAAGTTCAACAAGCAGACGAACGAGTGGGAGGACGG 55560 ||| | | ||||| || || |||| |||| || ||| ||||||||||| ||||||| Sbjct 74007 CTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGACGG 73948 Query 55561 CGAAACCGTGTTCCTCCGTACGTCGGTGTGGCGTGAGCTTGCAGAGGGCGCGGC 55614 ||| | ||||||||||| || |||||||| ||| | || ||| || ||| Sbjct 73947 CGACGCGCTGTTCCTCCGTGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGC 73894 >seq63415 Length=16791 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 64017 CGGTAGCTCAACTGGTAGAGCAGTGGTCTCCAAAGCCACCGGTTGCAGGTTCGACTCCTG 64076 |||| |||||| ||||||||||| |||||||||| || | |||||||||||||| ||||| Sbjct 5443 CGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502 Query 64077 TCCG 64080 |||| Sbjct 5503 TCCG 5506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243046472592144