Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_022052.1
Length=76050
Score E
Sequences producing significant alignments: (Bits) Value
seq62752 179 2e-40
seq63545 89.7 2e-13
seq63415 84.2 1e-11
>seq62752
Length=6345
Score = 179 bits (198), Expect = 2e-40
Identities = 502/749 (67%), Gaps = 35/749 (5%)
Strand=Plus/Minus
Query 51051 CCGTTCTTTGACGCTGACGAGGACGAGGTTGCCTCGCTGTACGAGGAACGCGTTACGCAG 51110
|||||||| | ||| |||||||||||||| ||| |||| ||| | | ||| | | |
Sbjct 2953 CCGTTCTTCGCCGCCGACGAGGACGAGGTCGCCGGCCTGTTCGA-GCAGGCGCTCCAGGG 2895
Query 51111 ATTC-TCGGGCCTAACACGATTGGCTCCGGCCATATCCGCAAGCTGCACCGGCTGGGCTA 51169
| | |||| || ||| || ||| ||| ||| ||||| |||||||| ||||||||
Sbjct 2894 CTACTTCGGCCCGAACCACATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTA 2835
Query 51170 TCTGCCGCTGCGGTTCTGCGCGGTGCCTGAGGGGACGATGGTTCCTATCGGCGTGCCCAG 51229
|||||||| | || ||||| |||| ||||| || | | ||| |||||||| |||
Sbjct 2834 CCTGCCGCTCGAGATCCGCGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCAC 2775
Query 51230 CTTCACCGTGGAGAACACGGACCCGGAGTTCTACTGGCTGACCAACTACGTCGAGACCGG 51289
| | || || |||||||| | | ||||||| ||||||| | |||||| |||||||| |
Sbjct 2774 CCTGACGGTCGAGAACACCGTCGACGAGTTCTTCTGGCTGCCGAACTACATCGAGACC-G 2716
Query 51290 CATTAGC-GCGGGCGTCTGGCAGGCCAGCACTAGCGCGACCATCGCTAAGGAATACCGGC 51348
|| | | ||| ||||||| || || ||| || | || || |||||
Sbjct 2715 CACTGTCTGCGTCGATCTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTACCGCG 2656
Query 51349 GCGTGATGATGGACGCGGCGCGGCTTACCGGCTCGGA-CCTGATCG-GCGTTGACTGGCA 51406
| | ||| |||| ||| | ||||| | || || | || || | ||||
Sbjct 2655 ACCTCATGGAGGACTGGGCCGCCCGCACCGGTGCAGATCCCG--CGAGCATCGACTTCGC 2598
Query 51407 GGTCCACGACTTCTCTTACCG-GGGCATGTCCTCGCAT-GA---GAGCGCGGCTGTCTCG 51461
| |||||||||||| | ||| ||||| || | |||| || | |||||| | |
Sbjct 2597 CGCCCACGACTTCTCGTTCCGCGGGCA-GT-CGAGCATCGAGTCGGCCGCGGCGGGC--- 2543
Query 51462 GGTGCGGCTCACCTGTTGAGCTTCACCGGGACGGACTCGCTGGTGTCGCTTGAGTGGATC 51521
||||| | |||||| | ||| ||| || |||||| || || || || | |||
Sbjct 2542 GGTGCCGGACACCTGCTCTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATC 2483
Query 51522 GACCGCTACTACGGCGGCGAGTACATCGCCGGGTCG--------GTCCCCGCTACGGAGC 51573
|||||||||||| |||||| || || |||| | |||||||| || ||||
Sbjct 2482 GACCGCTACTACCCCGGCGACAAC--GGCTGGGTGGCGGCGAGCGTCCCCGCGACCGAGC 2425
Query 51574 ACTCGGTGATGTGTACCGGCATTGAGACGGTGGGCGAGCTTGAGACGTTCCAGCGGCT-C 51632
|| || ||||| || | | | | |||||||| ||||| ||| || | | |
Sbjct 2424 ACAGCGTCATGTG---CGTCCGCGGCGCCGACGGCGAGCTGGAGACCTTCGCGCAGATCC 2368
Query 51633 TTGTCGCTGTACCCGGACGGG-ATCGTTAGCGTCGTTAGCGACACCTTCGACCTGTGGCG 51691
| | || ||||||| |||||| ||||| | || |||||| |||||||||||
Sbjct 2367 TCGACG-TGTACCC-GACGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGACCTGTTCAA 2310
Query 51692 CGTCCTGTGGGAGTACCTGCCGACGTTGCAGAAACAGATTCTCGCCCGCAACGGCAAGCT 51751
||||| ||| || ||| | | || | | || ||||||| ||||||||||
Sbjct 2309 GGTCCTCACCGAGACGCTCCCGCAGCTCAAGGACCGCATCACCGCCCGCGACGGCAAGCT 2250
Query 51752 GGTGATCCGGCCTGACTCGGGCGATCCGG 51780
|| ||||| || ||||||||||| ||||
Sbjct 2249 CGTCATCCGTCCGGACTCGGGCGACCCGG 2221
>seq63545
Length=90175
Score = 89.7 bits (98), Expect = 2e-13
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 55441 GGGCAACCTCACCGCTGATCCGGAACTGAGGTTCTTGGACTCTGGCGTGGCGGTCGCTCA 55500
||||||||||||||| || ||||| ||| | | | | | || | || || || |
Sbjct 74067 GGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCGAA 74008
Query 55501 GTTCTCGGTGGCGTCTACTCCCCGCAAGTTCAACAAGCAGACGAACGAGTGGGAGGACGG 55560
||| | | ||||| || || |||| |||| || ||| ||||||||||| |||||||
Sbjct 74007 CTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGACGG 73948
Query 55561 CGAAACCGTGTTCCTCCGTACGTCGGTGTGGCGTGAGCTTGCAGAGGGCGCGGC 55614
||| | ||||||||||| || |||||||| ||| | || ||| || |||
Sbjct 73947 CGACGCGCTGTTCCTCCGTGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGC 73894
>seq63415
Length=16791
Score = 84.2 bits (92), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 64017 CGGTAGCTCAACTGGTAGAGCAGTGGTCTCCAAAGCCACCGGTTGCAGGTTCGACTCCTG 64076
|||| |||||| ||||||||||| |||||||||| || | |||||||||||||| |||||
Sbjct 5443 CGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502
Query 64077 TCCG 64080
||||
Sbjct 5503 TCCG 5506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243046472592144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |