Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_022054.1
Length=48228
Score E
Sequences producing significant alignments: (Bits) Value
seq63378 129 2e-25
>seq63378
Length=15302
Score = 129 bits (142), Expect = 2e-25
Identities = 469/723 (65%), Gaps = 42/723 (6%)
Strand=Plus/Plus
Query 2193 CCGCGGTGTGGTCGGTCGATCACGCGGATGGGGCAAGTCGCCCTTCCTCGCGGCGATC-- 2250
||||| ||| || ||| | || || ||||||||||| || |||||||| |||| |
Sbjct 2803 CCGCGCTGTCATCCAGCGACCCCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCGCGACCGG 2862
Query 2251 --TCGTGCCTGGAAGCTCTCGGCCCGATCAAGTTCGACGGCTGGGATGCCAACGGGCAGC 2308
||| || ||||| ||| | | || |||||||||||| ||| |||||||||
Sbjct 2863 CATCG-GC---GAAGCGCTCTTCGAGGTCGTCCCCGACGGCTGGGACGCCGACGGGCAGC 2918
Query 2309 CCGTCGGTCGTCCTTGG-TCGACAGTCCGGACACCGCTC---GTGCAGATCACCGCAGTG 2364
|||||| || || ||| ||||| || ||| || || | | |||||||
Sbjct 2919 CCGTCGCCCGCCCGTGGATCGACT-TCAAGACGATCATCAACGTCCCGGTCACCGCGACC 2977
Query 2365 GATGAGAAACAGACCGCTAACACGTGGGGTCCCGTCCTCGAGATGCTGCGTGAGGAAGCG 2424
|| | ||| |||||||||| || | ||||||||| ||| || |||
Sbjct 2978 TCCGATGACCAGGTGCAGAACACGTGGGCACCGATGCTCGAGATGGCGCGCACCGACGCG 3037
Query 2425 CCGATCCACTCCGAGTACTCCGTCAACCCGATGGAGACCTTCGTCGCCCTGCCCAATCGC 2484
| || || |||| | |||| |||||||||| || ||| |||| | ||| ||
Sbjct 3038 CTTGTCAAC---GAGTTCGACGTCGACCCGATGGACACGTTCATCGCGATCCCCG---GC 3091
Query 2485 GGGCGCATGGAGTGCCGTACTGCCTCGTCT---CGATCCATCAAGGGTGCCCGCGCTCAC 2541
|| || ||| || || |||||| || ||||||||||| || || ||
Sbjct 3092 GGCAAGATCGAGCCGCGCAC---CTCGTCCGGCCGGTCCATCAAGGGCCTCCCCGGGCAG 3148
Query 2542 TTCGCCGTGCTC---GATCAGACGGAGGAGTGGGTGCCGTCCAACGGCGGACCCCGTCTC 2598
|||||| | || || ||||| ||||||||||| | ||||||||| | ||| ||
Sbjct 3149 GTCGCCGCGATCATGGACCAGACCGAGGAGTGGGTCAAGGGCAACGGCGGTCTCCGCCTG 3208
Query 2599 GCCAGGACCATGCGAGTCAACGCCGCGAAGGTCGGCGGGACGACGCTGGAGTCGCCGAAC 2658
|| || ||| || |||| | |||||| ||| | ||| | ||||| ||||||
Sbjct 3209 GCGCAGAACATCCGCAACAACTCGACGAAGGCGTCCGGCATCACGATCGAGTCCCCGAAC 3268
Query 2659 GCATACACTCCCGGTGAGGGGTCGGTTGCAGAGGCCTCAGCGAAGTTCTGGGACGACATC 2718
|| | ||| || || ||| ||||| || ||||| || ||| |||||| |||
Sbjct 3269 GCGTTCACCCCTGGCGAGAACTCGGTCGCCGAGGCATCCGCGCGCGACTGGGAGCTGATC 3328
Query 2719 -AAGCGCGG------CCGGGCAAAGTCGGAAG------GGTTGTACTACAACCATCGCGA 2765
|| | || || | | | ||| | | | |||| |||| |||||
Sbjct 3329 GAATCTGGGAAATACCCAGACCTCG-CGGCCGCCCGCCAGATCCTCTACGACCACCGCGA 3387
Query 2766 GGCTCCGCCTGAGACGGACTTTGACTCCGACGAGTCACTCATGGCTGGGCTCCGTGTGGC 2825
|| ||| | || || ||| | | | |||||| || || || || ||||| ||
Sbjct 3388 AGCGCCGGCCGACACCGACCCCGCCGACCGCGAGTCCCTGATCGCCGGCCTCCGGTACGC 3447
Query 2826 ATATGGCGACAGCTCGGGTCACCCGGACGGCTGTGTGATCCACGATCCTCCTTGCCCGCC 2885
|| ||||||||||||| ||||| |||||||| || |||||| | || || ||| |||
Sbjct 3448 GTACGGCGACAGCTCGGACCACCCCGACGGCTGCGTCATCCACCAGCCGCCGTGCGAGCC 3507
Query 2886 CGG 2888
|||
Sbjct 3508 CGG 3510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 154091417209920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |