Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_022054.1 Length=48228 Score E Sequences producing significant alignments: (Bits) Value seq63378 129 2e-25 >seq63378 Length=15302 Score = 129 bits (142), Expect = 2e-25 Identities = 469/723 (65%), Gaps = 42/723 (6%) Strand=Plus/Plus Query 2193 CCGCGGTGTGGTCGGTCGATCACGCGGATGGGGCAAGTCGCCCTTCCTCGCGGCGATC-- 2250 ||||| ||| || ||| | || || ||||||||||| || |||||||| |||| | Sbjct 2803 CCGCGCTGTCATCCAGCGACCCCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCGCGACCGG 2862 Query 2251 --TCGTGCCTGGAAGCTCTCGGCCCGATCAAGTTCGACGGCTGGGATGCCAACGGGCAGC 2308 ||| || ||||| ||| | | || |||||||||||| ||| ||||||||| Sbjct 2863 CATCG-GC---GAAGCGCTCTTCGAGGTCGTCCCCGACGGCTGGGACGCCGACGGGCAGC 2918 Query 2309 CCGTCGGTCGTCCTTGG-TCGACAGTCCGGACACCGCTC---GTGCAGATCACCGCAGTG 2364 |||||| || || ||| ||||| || ||| || || | | ||||||| Sbjct 2919 CCGTCGCCCGCCCGTGGATCGACT-TCAAGACGATCATCAACGTCCCGGTCACCGCGACC 2977 Query 2365 GATGAGAAACAGACCGCTAACACGTGGGGTCCCGTCCTCGAGATGCTGCGTGAGGAAGCG 2424 || | ||| |||||||||| || | ||||||||| ||| || ||| Sbjct 2978 TCCGATGACCAGGTGCAGAACACGTGGGCACCGATGCTCGAGATGGCGCGCACCGACGCG 3037 Query 2425 CCGATCCACTCCGAGTACTCCGTCAACCCGATGGAGACCTTCGTCGCCCTGCCCAATCGC 2484 | || || |||| | |||| |||||||||| || ||| |||| | ||| || Sbjct 3038 CTTGTCAAC---GAGTTCGACGTCGACCCGATGGACACGTTCATCGCGATCCCCG---GC 3091 Query 2485 GGGCGCATGGAGTGCCGTACTGCCTCGTCT---CGATCCATCAAGGGTGCCCGCGCTCAC 2541 || || ||| || || |||||| || ||||||||||| || || || Sbjct 3092 GGCAAGATCGAGCCGCGCAC---CTCGTCCGGCCGGTCCATCAAGGGCCTCCCCGGGCAG 3148 Query 2542 TTCGCCGTGCTC---GATCAGACGGAGGAGTGGGTGCCGTCCAACGGCGGACCCCGTCTC 2598 |||||| | || || ||||| ||||||||||| | ||||||||| | ||| || Sbjct 3149 GTCGCCGCGATCATGGACCAGACCGAGGAGTGGGTCAAGGGCAACGGCGGTCTCCGCCTG 3208 Query 2599 GCCAGGACCATGCGAGTCAACGCCGCGAAGGTCGGCGGGACGACGCTGGAGTCGCCGAAC 2658 || || ||| || |||| | |||||| ||| | ||| | ||||| |||||| Sbjct 3209 GCGCAGAACATCCGCAACAACTCGACGAAGGCGTCCGGCATCACGATCGAGTCCCCGAAC 3268 Query 2659 GCATACACTCCCGGTGAGGGGTCGGTTGCAGAGGCCTCAGCGAAGTTCTGGGACGACATC 2718 || | ||| || || ||| ||||| || ||||| || ||| |||||| ||| Sbjct 3269 GCGTTCACCCCTGGCGAGAACTCGGTCGCCGAGGCATCCGCGCGCGACTGGGAGCTGATC 3328 Query 2719 -AAGCGCGG------CCGGGCAAAGTCGGAAG------GGTTGTACTACAACCATCGCGA 2765 || | || || | | | ||| | | | |||| |||| ||||| Sbjct 3329 GAATCTGGGAAATACCCAGACCTCG-CGGCCGCCCGCCAGATCCTCTACGACCACCGCGA 3387 Query 2766 GGCTCCGCCTGAGACGGACTTTGACTCCGACGAGTCACTCATGGCTGGGCTCCGTGTGGC 2825 || ||| | || || ||| | | | |||||| || || || || ||||| || Sbjct 3388 AGCGCCGGCCGACACCGACCCCGCCGACCGCGAGTCCCTGATCGCCGGCCTCCGGTACGC 3447 Query 2826 ATATGGCGACAGCTCGGGTCACCCGGACGGCTGTGTGATCCACGATCCTCCTTGCCCGCC 2885 || ||||||||||||| ||||| |||||||| || |||||| | || || ||| ||| Sbjct 3448 GTACGGCGACAGCTCGGACCACCCCGACGGCTGCGTCATCCACCAGCCGCCGTGCGAGCC 3507 Query 2886 CGG 2888 ||| Sbjct 3508 CGG 3510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154091417209920