Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_022059.1
Length=77367
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 367 6e-97
seq63545 132 2e-26
>seq63531
Length=42858
Score = 367 bits (406), Expect = 6e-97
Identities = 557/789 (71%), Gaps = 9/789 (1%)
Strand=Plus/Minus
Query 67574 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 67633
||||| ||| | || || |||| ||| ||||||||||| || || | ||||| |
Sbjct 22950 ACCGGGTCGGTGGCGCTCGACGTCGCGCTCGGCATCGGTGGCCTGCCCCGTGGCCGCATC 22891
Query 67634 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 67693
|| ||||||||||| || ||||| || || ||| | ||| || ||||||| | |||
Sbjct 22890 GTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGATCCACGCCATCGCC 22831
Query 67694 AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCT 67753
|| |||||| ||||| |||| ||| || | ||||||||| || || | ||||||||
Sbjct 22830 AACGCCCAGCGCGCCGGCGGCATCGCGGCGTTCATCGACGCGGAGCACGCCCTCGACCCC 22771
Query 67754 GAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACT 67813
||||||||| | |||||| || || ||||| || | || |||||| |||||
Sbjct 22770 GAGTACGCCAAGAAGCTCGGTGTCGACATCGACGCGCTGCTCGTGTCGCAGCCCGACACA 22711
Query 67814 GGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATC 67873
| |||||||| || ||||||| ||| | |||||| || ||| | | | |||||
Sbjct 22710 GCGGAGCAGGCGCTCGAGATCGCGGACATGCTCGTCCGCTCCGGCTCGATCGACCTCATC 22651
Query 67874 GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGAC 67933
|| | ||||| || ||||| || ||||| || || ||| |||| || || || || |||
Sbjct 22650 GTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGCGAC 22591
Query 67934 TCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACG 67993
|| |||||||| ||||| || ||||| ||||| |||||| | |||||||| |||| |
Sbjct 22590 TCCCACGTCGGTCTGCAGGCGCGCCTCATGTCCCAGGCCCTCCGCAAGCTCGCCGGTGGG 22531
Query 67994 AT-TGCCAGCACC--AACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGC 68050
| |||| || | |||| | | | | | || ||||||||||||||||||||
Sbjct 22530 CTGAACCAGACCCAGACCACGATGA---TCTTCATCAACCAGCTGCGCGAGAAGATCGG- 22475
Query 68051 AACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCC 68110
|||| || ||| | |||||||| |||| |||||||| ||| ||||||||
Sbjct 22474 --CGTGTTCTTCGGTTCCCCCGAGACCACGTCCGGCGGTAAGGCGCTGAAGTTCTACGCG 22417
Query 68111 TCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGC 68170
|| || || | || |||| | |||| || ||| || || || ||||||
Sbjct 22416 TCCGTCCGACTCGACATCCGGCGCATCGAGACGCTCAAGAGCGGGACCGACGCCGTCGGC 22357
Query 68171 AACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAG 68230
|||||||| ||||| ||||| |||||||||||| ||||||| || | ||||| |||
Sbjct 22356 AACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAGGCCGAG 22297
Query 68231 TTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCCGAACTCCTCGACATGGCCGTT 68290
|| |||| | ||||||| |||||| || || |||| | ||||||||| | | ||
Sbjct 22296 TTCGACATCCTGTACGGCGTGGGCATCTCGCGAGAGGGCTCGCTCCTCGACTTCGGTGTC 22237
Query 68291 TCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGC 68350
|| || || |||||||||| || ||||||| || |||| | | | | ||||
Sbjct 22236 GACCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCGACCAGCTCGGG 22177
Query 68351 CAGGGCAAG 68359
|||||||||
Sbjct 22176 CAGGGCAAG 22168
>seq63545
Length=90175
Score = 132 bits (146), Expect = 2e-26
Identities = 215/306 (70%), Gaps = 5/306 (2%)
Strand=Plus/Minus
Query 60958 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 61017
|| |||| ||| ||||| ||||| |||||||| | ||| || |||| ||||| ||
Sbjct 74069 GTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCG 74010
Query 61018 AACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGAC 61074
||||||||| ||| ||||| | ||| |||| |||| ||| ||| |||
Sbjct 74009 AACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGAC 73950
Query 61075 GGCGACGCCACATTCCTCCGCTGC-ACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 61133
|||||||| |||||||| ||| | | | |||||||| ||||||| |||| ||||
Sbjct 73949 GGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGCGGG 73891
Query 61134 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 61193
|| ||| ||| |||||||||| ||| || |||| |||||||||| | |
Sbjct 73890 CTCACTGACGAAGGGCTCCCGCGTCATCGCGCAGGGTCGCCTCCGTCAGCGCTCCTACCA 73831
Query 61194 GACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 61253
| | || ||| | ||||||| ||||||| | ||||| |||||||||||||| ||
Sbjct 73830 GGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTCGAGGTCGACGAGATCGGCCCCTC 73771
Query 61254 GCTGCG 61259
||| ||
Sbjct 73770 GCTCCG 73765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 247257602618112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |