Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_022065.1
Length=74533
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 441 3e-119
seq63545 141 4e-29
>seq63531
Length=42858
Score = 441 bits (488), Expect = 3e-119
Identities = 581/800 (73%), Gaps = 9/800 (1%)
Strand=Plus/Minus
Query 65034 ACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGA 65093
||||||| | ||||| || | || || |||| ||| || |||||||| || ||
Sbjct 22961 ACGTCATCCAGACCGGGTCGGTGGCGCTCGACGTCGCGCTCGGCATCGGTGGCCTGCCCC 22902
Query 65094 GGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCC 65153
| ||||| | || || ||||||||||| || || || || ||| | || ||| |||
Sbjct 22901 GTGGCCGCATCGTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGATCC 22842
Query 65154 ACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACT 65213
|||| | ||||| || ||| ||||| |||| ||| || | ||||||||| ||||||
Sbjct 22841 ACGCCATCGCCAACGCCCAGCGCGCCGGCGGCATCGCGGCGTTCATCGACGCGGAGCACG 22782
Query 65214 CCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 65273
|||| ||||| |||||||||||| ||||||||| ||| ||||| || | ||| |
Sbjct 22781 CCCTCGACCCCGAGTACGCCAAGAAGCTCGGTGTCGACATCGACGCGCTGCTCGTGTCGC 22722
Query 65274 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 65333
|||| ||||| | |||||||| || ||||||| ||| | |||||| || ||| |
Sbjct 22721 AGCCCGACACAGCGGAGCAGGCGCTCGAGATCGCGGACATGCTCGTCCGCTCCGGCTCGA 22662
Query 65334 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 65393
| | || ||||| | ||||| || ||||| || ||||| ||||||||| |||| ||||
Sbjct 22661 TCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCG 22602
Query 65394 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 65453
| || || ||| |||||||| ||||| |||||||||||||| |||||| | |||||||
Sbjct 22601 AGATGGGCGACTCCCACGTCGGTCTGCAGGCGCGCCTCATGTCCCAGGCCCTCCGCAAGC 22542
Query 65454 TCACCGG-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 65512
|| |||| | |||| ||| | || || | ||| |||||||| ||||||||
Sbjct 22541 TCGCCGGTGGGCTGAACCAG-ACCCAGACCACGATGATCTTCATCAACCAGCTGCGCGAG 22483
Query 65513 AAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGG 65572
|||||||| |||| || ||| | |||||||| | ||||| ||||| ||| |
Sbjct 22482 AAGATCGG---CGTGTTCTTCGGTTCCCCCGAGACCACGTCCGGCGGTAAGGCGCTGAAG 22426
Query 65573 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 65632
|||||||| || ||||| | || |||| ||||||| || ||| || ||
Sbjct 22425 TTCTACGCGTCCGTCCGACTCGACATCCGGCGCATCGAGACGCTCAAGAGCGGGACCGAC 22366
Query 65633 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 65692
|| ||||||||||||||||| || |||||||||||||||||| |||| ||||| |
Sbjct 22365 GCCGTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAG 22306
Query 65693 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGAC 65752
| ||||||||| | || ||||||| | |||||||||||| |||| | |||||||||
Sbjct 22305 CAGGCCGAGTTCGACATCCTGTACGGCGTGGGCATCTCGCGAGAGGGCTCGCTCCTCGAC 22246
Query 65753 CTGGCCGTGTCG--CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACA 65810
| | |||||| || ||| | || ||||||||||| ||||||| || |||| | |
Sbjct 22245 TT--CGGTGTCGACCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCG 22188
Query 65811 AGAACGTCGCCCAGGGCAAG 65830
| | ||| |||||||||
Sbjct 22187 ACCAGCTCGGGCAGGGCAAG 22168
>seq63545
Length=90175
Score = 141 bits (156), Expect = 4e-29
Identities = 217/306 (71%), Gaps = 5/306 (2%)
Strand=Plus/Minus
Query 59288 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 59347
|| |||| ||| ||||| ||||| |||||||| | ||| || |||| ||||| ||
Sbjct 74069 GTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCG 74010
Query 59348 AACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGAC 59404
||||||||| ||| ||||| | ||| |||| |||| ||| ||| |||
Sbjct 74009 AACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGAC 73950
Query 59405 GGCGACGCCACATTCCTCCGCTGC-ACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 59463
|||||||| |||||||| ||| | | | |||||||| ||||||| |||||||||
Sbjct 73949 GGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGCGGG 73891
Query 59464 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 59523
|| ||| ||| |||||||||| ||| || |||| |||||||||| | |
Sbjct 73890 CTCACTGACGAAGGGCTCCCGCGTCATCGCGCAGGGTCGCCTCCGTCAGCGCTCCTACCA 73831
Query 59524 GACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 59583
| | |||||| | ||||||| ||||||| | ||||| |||||||||||||| ||
Sbjct 73830 GGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTCGAGGTCGACGAGATCGGCCCCTC 73771
Query 59584 GCTGCG 59589
||| ||
Sbjct 73770 GCTCCG 73765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 238195839145376
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