Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_022071.1
Length=76129
Score E
Sequences producing significant alignments: (Bits) Value
seq62752 172 3e-38
>seq62752
Length=6345
Score = 172 bits (190), Expect = 3e-38
Identities = 433/650 (67%), Gaps = 15/650 (2%)
Strand=Plus/Minus
Query 50742 GACCACATTCGCCAGTTGCATCGGCTGGGGTTCCTGCCGCTGCGGTTCTGCGCGGTGCCT 50801
|||||| | ||| |||| || ||||| | ||||||||| | || ||||| ||||
Sbjct 2866 GACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCTCGAGATCCGCGCGCTGCCC 2807
Query 50802 GAGGGGACGCTAGTGCCTATCGGGGTTCCATCGTTCACGGTGGAGAACACTCACGAGTCG 50861
||||| || || | || ||||| || | | | ||||| |||||||| ||| |
Sbjct 2806 GAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTGACGGTCGAGAACACCGTCGACGAG 2747
Query 50862 TTCTACTGGCTGACCAACTACATCGAGACCGGCCTGAGCGCCGGGGTGTGGCAGGCCAGC 50921
|||| ||||||| | |||||||||||||||| ||| || | | ||||| ||
Sbjct 2746 TTCTTCTGGCTGCCGAACTACATCGAGACCGCACTGTCTGCGTCGATCTGGCACCCCTCG 2687
Query 50922 ACCAGCGCGACCATCGCTAAGCAGTACCGGCGGGTGCTTGAGGCCGCGGCCTTGCGGACC 50981
|| ||| || | || ||||||| | | |||| | |||| || |||
Sbjct 2686 ACGGTCGCCACGAAGGCGCTCGAGTACCGCGACCTCATGGAGGACTGGGCCGCCCGCACC 2627
Query 50982 GGCTCGGACCTGGCGGGCGTCGACTG-GCAGTGCCATGACTTCTCTTACCG-GGGCATGT 51039
|| | || | ||| || |||||| || | ||| |||||||| | ||| ||||| ||
Sbjct 2626 GGTGCAGATCCCGCGAGCATCGACTTCGCCGC-CCACGACTTCTCGTTCCGCGGGCA-GT 2569
Query 51040 CCTCGCAT-GAGAGCGCGGCGGCGTCGGGCGCGGCGCACCTGCTGAGCTTCACCGGTACG 51098
| |||| ||| || |||||| || || | |||||||| ||| ||| ||
Sbjct 2568 CGA-GCATCGAGTCGGCCGCGGCGGGCGGTGCCGGACACCTGCTCTCGTTCCTCGGCACC 2510
Query 51099 GACTCGCTGGTCTCACTCGATTGGATCGACCGCTACTACGGCGGCGATTAC------GTC 51152
|||||| || ||| ||||| | ||||||||||||||| |||||| || ||
Sbjct 2509 GACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTACCCCGGCGACAACGGCTGGGTG 2450
Query 51153 GCGGGGTCGGTCCCGGCTACCGAGCACTCGGTGATGTGTACCGGCATTGAGACGGTCGGG 51212
|||| | ||||| || ||||||||| || ||||| || | | | | |||
Sbjct 2449 GCGGCGAGCGTCCCCGCGACCGAGCACAGCGTCATGTG---CGTCCGCGGCGCCGACGGC 2393
Query 51213 GAGCTTGAGACGTTTAGGCGGCTGCTGGACCTGTACCCGACCGGCATCGTTAGCGTCGTT 51272
||||| ||||| || || | | || ||| |||||||||| |||||||| | ||
Sbjct 2392 GAGCTGGAGACCTTCGCGCAGATCCTCGACGTGTACCCGACGGGCATCGTCTCGGCGGTG 2333
Query 51273 AGCGACACGTTCGACCTGTGGAAGGTGCTAACCACGTACCTGCCGACGCTGTATAAGCAG 51332
|||||| |||||||||| ||||| || ||| | || ||| ||| | | |
Sbjct 2332 AGCGACGGCTTCGACCTGTTCAAGGTCCTCACCGAGACGCTCCCGCAGCTCAAGGACCGC 2273
Query 51333 ATCGTGGGCCGGGACGGGAAGCTGGTCATTCGGCCTGACTCCGGCGATCC 51382
||| | ||| ||||| ||||| ||||| || || ||||| ||||| ||
Sbjct 2272 ATCACCGCCCGCGACGGCAAGCTCGTCATCCGTCCGGACTCGGGCGACCC 2223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243299076443360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |