Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq59251 113 7e-19 >seq59251 Length=2102 Score = 113 bits (124), Expect = 7e-19 Identities = 241/351 (69%), Gaps = 27/351 (8%) Strand=Plus/Minus Query 122737 TGCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGCGCGCC 122796 ||| |||||| | |||||||||||||||||||| ||||||||| ||||| | Sbjct 1461 TGCGGAGAACGTGATGATCGTCGACCTGGTGCGGAACGACCTG--------CTGCGGAC- 1411 Query 122797 CGGCAGCGTCGTCGTACCGCCAGGTCGCCT--CATGGCGA--TCGAGACCTATGCCGCCG 122852 |||| | || || | || |||| | | |||| ||||||| || || || Sbjct 1410 -GGCACTGCCGGGGTCCGTGCACGTCGACCGGCTCTGCGACGTCGAGACGTACGCGAGCG 1352 Query 122853 TGCACCAGATGGTGACCACCGTCGACGCCCTGTTGGATCGGCACAGGACGGCGC---TGG 122909 |||||||||||||| |||| ||| ||| || || |||| |||| ||| || Sbjct 1351 TGCACCAGATGGTGTCCACGATCGGTGCCGTGCTG--CCGGC-GGGGACCTCGCGGGCGG 1295 Query 122910 ACCTCGTGCGTGCGGCCTTTCCGCCGGGCTCGATGACGGGTGCGCCCAAAGCGCGCAGCA 122969 || | ||||| ||||| |||||||| || |||||||| || ||||| || || | Sbjct 1294 ACGTGGTGCGGGCGGCGTTTCCGCCCGGGTCGATGACCGGGGCGCCGAAGATCCGGGCGA 1235 Query 122970 TGGACATTTTGGATCGCCTCGAAGAGCACCGTCCGCGCGGAATCTATTCGGGCGCACTCG 123029 ||| || ||| || ||||||| | || |||||||| | || ||||| | ||| Sbjct 1234 TGGCGATCGCGGACCGGCTCGAAGGG--GCG-CCGCGCGGGGTGTACTCGGGGGTGATCG 1178 Query 123030 GGTTCTTTTCGGCCGACGGCGCCTGCTCG--CTGTCGGTGGTAATCCGCAC 123078 ||| ||| ||||| ||| | | ||| |||||||||| |||||||| Sbjct 1177 GGTACTTCTCGGCGAGCGGTTC--GGTCGATCTGTCGGTGGCCATCCGCAC 1129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909474169948496