Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_022330.1
Length=76586
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 437 4e-118
seq63545 138 6e-28
>seq63531
Length=42858
Score = 437 bits (484), Expect = 4e-118
Identities = 580/800 (73%), Gaps = 9/800 (1%)
Strand=Plus/Minus
Query 66126 ACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGA 66185
||||||| | ||||| || | || || |||| ||| || |||||||| || ||
Sbjct 22961 ACGTCATCCAGACCGGGTCGGTGGCGCTCGACGTCGCGCTCGGCATCGGTGGCCTGCCCC 22902
Query 66186 GGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCC 66245
| ||||| | || || ||||||||||| || || || || ||| | || ||| |||
Sbjct 22901 GTGGCCGCATCGTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGATCC 22842
Query 66246 ACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACT 66305
|||| | ||||| || ||| ||||| |||| ||| || | ||||||||| ||||||
Sbjct 22841 ACGCCATCGCCAACGCCCAGCGCGCCGGCGGCATCGCGGCGTTCATCGACGCGGAGCACG 22782
Query 66306 CCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 66365
|||| |||||||||||||||||| ||||||||| ||| ||||| || | ||| |
Sbjct 22781 CCCTCGACCCCGAGTACGCCAAGAAGCTCGGTGTCGACATCGACGCGCTGCTCGTGTCGC 22722
Query 66366 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 66425
|||| ||||| | |||||||| || ||||||| ||| | |||||| || ||| |
Sbjct 22721 AGCCCGACACAGCGGAGCAGGCGCTCGAGATCGCGGACATGCTCGTCCGCTCCGGCTCGA 22662
Query 66426 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 66485
| | || ||||| | ||||| || ||||| || ||||| ||||||||| |||| ||||
Sbjct 22661 TCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCG 22602
Query 66486 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 66545
| || || ||| |||||||| ||||| |||||||||||||| |||||| | |||||||
Sbjct 22601 AGATGGGCGACTCCCACGTCGGTCTGCAGGCGCGCCTCATGTCCCAGGCCCTCCGCAAGC 22542
Query 66546 TCACTGG-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66604
|| | || | |||| ||| | || || | ||| |||||||| ||||||||
Sbjct 22541 TCGCCGGTGGGCTGAACCAG-ACCCAGACCACGATGATCTTCATCAACCAGCTGCGCGAG 22483
Query 66605 AAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGG 66664
|||||||| |||| || ||| | |||||||| | ||||| ||||| ||| |
Sbjct 22482 AAGATCGG---CGTGTTCTTCGGTTCCCCCGAGACCACGTCCGGCGGTAAGGCGCTGAAG 22426
Query 66665 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 66724
|||||||| || ||||| | || |||| ||||||| || ||| || ||
Sbjct 22425 TTCTACGCGTCCGTCCGACTCGACATCCGGCGCATCGAGACGCTCAAGAGCGGGACCGAC 22366
Query 66725 GCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66784
|| ||||||||||||||||| || || ||||||||||||||| |||| ||||| |
Sbjct 22365 GCCGTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAG 22306
Query 66785 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGAC 66844
| ||||||||| | || ||||||| | |||||||||||| |||| | |||||||||
Sbjct 22305 CAGGCCGAGTTCGACATCCTGTACGGCGTGGGCATCTCGCGAGAGGGCTCGCTCCTCGAC 22246
Query 66845 CTGGCCGTGTCG--CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACA 66902
| | |||||| || ||| | || ||||||||||| ||||||| || |||| | |
Sbjct 22245 TT--CGGTGTCGACCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCG 22188
Query 66903 AGAACGTCGCTCAGGGCAAG 66922
| | ||| |||||||||
Sbjct 22187 ACCAGCTCGGGCAGGGCAAG 22168
>seq63545
Length=90175
Score = 138 bits (152), Expect = 6e-28
Identities = 216/306 (71%), Gaps = 5/306 (2%)
Strand=Plus/Minus
Query 60578 GTCGGCACGCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 60637
|| |||| || ||||| ||||| |||||||| | ||| || |||| ||||| ||
Sbjct 74069 GTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCG 74010
Query 60638 AACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGAC 60694
||||||||| ||| ||||| | ||| |||| |||| ||| ||| |||
Sbjct 74009 AACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGAC 73950
Query 60695 GGCGACGCCACATTCCTCCGCTGC-ACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 60753
|||||||| |||||||| ||| | | | |||||||| ||||||| |||||||||
Sbjct 73949 GGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGCGGG 73891
Query 60754 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 60813
|| ||| ||| |||||||||| ||| || |||| |||||||||| | |
Sbjct 73890 CTCACTGACGAAGGGCTCCCGCGTCATCGCGCAGGGTCGCCTCCGTCAGCGCTCCTACCA 73831
Query 60814 GACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 60873
| | |||||| | ||||||| ||||||| | ||||| |||||||||||||| ||
Sbjct 73830 GGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTCGAGGTCGACGAGATCGGCCCCTC 73771
Query 60874 GCTGCG 60879
||| ||
Sbjct 73770 GCTCCG 73765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 244760341759888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |