Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_022972.2 Length=37372 Score E Sequences producing significant alignments: (Bits) Value seq63378 98.7 2e-16 >seq63378 Length=15302 Score = 98.7 bits (108), Expect = 2e-16 Identities = 190/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 9359 AAGGGTTTCGGTCGGCTGCAGGCCATCGAGAACGCTAAGGCCAAACTGTCGGGCCTCGGC 9418 ||||| ||| || || | | |||||| |||| |||| ||| || | |||||| Sbjct 11577 AAGGGCATCGCCCGACTCCTCGACATCGACGACGCGAAGGGCAAGCTCGCCGGCCTC--- 11633 Query 9419 CACGATGTCGA----GTCCGTCACCGAGATCATGAACAACGCGATGGCGTCCGTGAAGGG 9474 | || ||||| | | || | ||||||| ||| ||| || |||||| || Sbjct 11634 -AAGACGTCGACGAAGGACATCGCGTCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGG 11692 Query 9475 CACGGCGTTCGGTCTCGGTGACGCGGCATCCGCTGCGGCCGGCGCCGTAGCCGCCGGTGT 9534 || || ||||||||||| ||||| || || ||| | |||||| ||||||||| | Sbjct 11693 GACCGCCTTCGGTCTCGGCGACGCAGCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTAT 11752 Query 9535 GAAGCCAGGCAAGGACCTGACCCGGACACTCAAGCTGATCGGTGACGGCGCCTCAATCGC 9594 ||||| ||| ||| || || | |||||||| | || |||| ||| | ||||| Sbjct 11753 CAAGCCCGGCCAGGCGCTCACGAAGTACCTCAAGCTCACCGCCGACGCGGCCACCATCGC 11812 Query 9595 CGGCGTCGGGTTTGACGAGATGGCTGCGATCTTCAACAAG 9634 || ||| | | |||||||||| ||||| |||||||| Sbjct 11813 TGGTGTCTCGCTCGACGAGATGGGCTCGATCATCAACAAG 11852 Score = 87.8 bits (96), Expect = 4e-13 Identities = 192/286 (67%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 11668 GGCGTGGGACAAGATCCAAGAGATCGCGAAGATGCCTGTCCGGTTTGTGATCGACACGGT 11727 ||| |||||| | || | |||| |||||| || || ||| ||| |||||||||| Sbjct 13796 GGCCTGGGACGCGGTCAAGGAGAAGGCGAAGGCCCCGATCAAGTTCGTGGTCGACACGGT 13855 Query 11728 CATCAACGATGGGCTGATCGGGGCGTTCAACAACATCGCGAATGTCCTTCCGGGCGTCGA 11787 ||| | | ||| | |||| |||||||| || | || |||| | Sbjct 13856 GATCCAGAAGGGGATCATCGACAACTTCAACAAGGCTGCCGACTTC-TTCCACAC----- 13909 Query 11788 CAAGCTGCCCCGG---GTGGCCCTGCCGGCAGGGTTCGCTGATGGCGGGTACACGGGCGA 11844 ||||| | || | ||| |||| ||| || ||||| || || ||||| || Sbjct 13910 CAAGCACCTCCCGAACGTGTCCCTCCCGAAGGGCTTCGCCACCGGTGGCTACACCGGTCC 13969 Query 11845 CGGCGGCAAGTACGAGCCTGCGGGTATCGTGCACGCCGGCGAGTTCGTGTTCACGAAGGA 11904 ||||||||||| ||| ||||| || ||||| ||| | ||||||||| ||||||||||| Sbjct 13970 CGGCGGCAAGTTCGACCCTGCCGGCATCGTCCACAAGGACGAGTTCGTCTTCACGAAGGA 14029 Query 11905 GCAGACGAGGCGGGCCGGCGTCGGGAACCTGTACGCGATGGCCCGC 11950 |||||| | || |||||| ||| || |||| || || ||| Sbjct 14030 GCAGACCCGACGCATCGGCGTGGGGCGGCTCTACGACATCGCTCGC 14075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119378480392512