Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_022972.2
Length=37372
Score E
Sequences producing significant alignments: (Bits) Value
seq63378 98.7 2e-16
>seq63378
Length=15302
Score = 98.7 bits (108), Expect = 2e-16
Identities = 190/280 (68%), Gaps = 8/280 (3%)
Strand=Plus/Plus
Query 9359 AAGGGTTTCGGTCGGCTGCAGGCCATCGAGAACGCTAAGGCCAAACTGTCGGGCCTCGGC 9418
||||| ||| || || | | |||||| |||| |||| ||| || | ||||||
Sbjct 11577 AAGGGCATCGCCCGACTCCTCGACATCGACGACGCGAAGGGCAAGCTCGCCGGCCTC--- 11633
Query 9419 CACGATGTCGA----GTCCGTCACCGAGATCATGAACAACGCGATGGCGTCCGTGAAGGG 9474
| || ||||| | | || | ||||||| ||| ||| || |||||| ||
Sbjct 11634 -AAGACGTCGACGAAGGACATCGCGTCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGG 11692
Query 9475 CACGGCGTTCGGTCTCGGTGACGCGGCATCCGCTGCGGCCGGCGCCGTAGCCGCCGGTGT 9534
|| || ||||||||||| ||||| || || ||| | |||||| ||||||||| |
Sbjct 11693 GACCGCCTTCGGTCTCGGCGACGCAGCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTAT 11752
Query 9535 GAAGCCAGGCAAGGACCTGACCCGGACACTCAAGCTGATCGGTGACGGCGCCTCAATCGC 9594
||||| ||| ||| || || | |||||||| | || |||| ||| | |||||
Sbjct 11753 CAAGCCCGGCCAGGCGCTCACGAAGTACCTCAAGCTCACCGCCGACGCGGCCACCATCGC 11812
Query 9595 CGGCGTCGGGTTTGACGAGATGGCTGCGATCTTCAACAAG 9634
|| ||| | | |||||||||| ||||| ||||||||
Sbjct 11813 TGGTGTCTCGCTCGACGAGATGGGCTCGATCATCAACAAG 11852
Score = 87.8 bits (96), Expect = 4e-13
Identities = 192/286 (67%), Gaps = 9/286 (3%)
Strand=Plus/Plus
Query 11668 GGCGTGGGACAAGATCCAAGAGATCGCGAAGATGCCTGTCCGGTTTGTGATCGACACGGT 11727
||| |||||| | || | |||| |||||| || || ||| ||| ||||||||||
Sbjct 13796 GGCCTGGGACGCGGTCAAGGAGAAGGCGAAGGCCCCGATCAAGTTCGTGGTCGACACGGT 13855
Query 11728 CATCAACGATGGGCTGATCGGGGCGTTCAACAACATCGCGAATGTCCTTCCGGGCGTCGA 11787
||| | | ||| | |||| |||||||| || | || |||| |
Sbjct 13856 GATCCAGAAGGGGATCATCGACAACTTCAACAAGGCTGCCGACTTC-TTCCACAC----- 13909
Query 11788 CAAGCTGCCCCGG---GTGGCCCTGCCGGCAGGGTTCGCTGATGGCGGGTACACGGGCGA 11844
||||| | || | ||| |||| ||| || ||||| || || ||||| ||
Sbjct 13910 CAAGCACCTCCCGAACGTGTCCCTCCCGAAGGGCTTCGCCACCGGTGGCTACACCGGTCC 13969
Query 11845 CGGCGGCAAGTACGAGCCTGCGGGTATCGTGCACGCCGGCGAGTTCGTGTTCACGAAGGA 11904
||||||||||| ||| ||||| || ||||| ||| | ||||||||| |||||||||||
Sbjct 13970 CGGCGGCAAGTTCGACCCTGCCGGCATCGTCCACAAGGACGAGTTCGTCTTCACGAAGGA 14029
Query 11905 GCAGACGAGGCGGGCCGGCGTCGGGAACCTGTACGCGATGGCCCGC 11950
|||||| | || |||||| ||| || |||| || || |||
Sbjct 14030 GCAGACCCGACGCATCGGCGTGGGGCGGCTCTACGACATCGCTCGC 14075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119378480392512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |