Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_022976.1
Length=75894
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 441 3e-119
seq63545 132 2e-26
>seq63531
Length=42858
Score = 441 bits (488), Expect = 3e-119
Identities = 581/800 (73%), Gaps = 9/800 (1%)
Strand=Plus/Minus
Query 66083 ACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGA 66142
||||||| | ||||| || | || || |||| ||| || |||||||| || ||
Sbjct 22961 ACGTCATCCAGACCGGGTCGGTGGCGCTCGACGTCGCGCTCGGCATCGGTGGCCTGCCCC 22902
Query 66143 GGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCC 66202
| ||||| | || || ||||||||||| || || || || ||| | || ||| |||
Sbjct 22901 GTGGCCGCATCGTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGATCC 22842
Query 66203 ACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACT 66262
|||| | ||||| || ||| ||||| |||| ||| || | ||||||||| ||||||
Sbjct 22841 ACGCCATCGCCAACGCCCAGCGCGCCGGCGGCATCGCGGCGTTCATCGACGCGGAGCACG 22782
Query 66263 CCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 66322
|||| |||||||||||||||||| ||||||||| ||| ||||| || | ||| |
Sbjct 22781 CCCTCGACCCCGAGTACGCCAAGAAGCTCGGTGTCGACATCGACGCGCTGCTCGTGTCGC 22722
Query 66323 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 66382
|||| ||||| | |||||||| || ||||||| ||| | |||||| || ||| |
Sbjct 22721 AGCCCGACACAGCGGAGCAGGCGCTCGAGATCGCGGACATGCTCGTCCGCTCCGGCTCGA 22662
Query 66383 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 66442
| | || ||||| | ||||| || ||||| || ||||| ||||||||| |||| ||||
Sbjct 22661 TCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCG 22602
Query 66443 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 66502
| || || ||| |||||||| ||||| |||||||||||||| |||||| | |||||||
Sbjct 22601 AGATGGGCGACTCCCACGTCGGTCTGCAGGCGCGCCTCATGTCCCAGGCCCTCCGCAAGC 22542
Query 66503 TCACCGG-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66561
|| |||| | |||| ||| | || || | ||| |||||||| ||||||||
Sbjct 22541 TCGCCGGTGGGCTGAACCAG-ACCCAGACCACGATGATCTTCATCAACCAGCTGCGCGAG 22483
Query 66562 AAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGG 66621
|||||||| |||| || ||| | |||||||| | ||||| ||||| ||| |
Sbjct 22482 AAGATCGG---CGTGTTCTTCGGTTCCCCCGAGACCACGTCCGGCGGTAAGGCGCTGAAG 22426
Query 66622 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 66681
|||||||| || ||||| | || |||| ||||||| || ||| || ||
Sbjct 22425 TTCTACGCGTCCGTCCGACTCGACATCCGGCGCATCGAGACGCTCAAGAGCGGGACCGAC 22366
Query 66682 GCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66741
|| ||||||||||||||||| || || ||||||||||||||| |||| ||||| |
Sbjct 22365 GCCGTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAG 22306
Query 66742 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGAC 66801
| ||||||||| | || ||||||| | |||||||||||| |||| | |||||||||
Sbjct 22305 CAGGCCGAGTTCGACATCCTGTACGGCGTGGGCATCTCGCGAGAGGGCTCGCTCCTCGAC 22246
Query 66802 CTGGCCGTGTCG--CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACA 66859
| | |||||| || ||| | || ||||||||||| ||||||| || |||| | |
Sbjct 22245 TT--CGGTGTCGACCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCG 22188
Query 66860 AGAACGTCGCCCAGGGCAAG 66879
| | ||| |||||||||
Sbjct 22187 ACCAGCTCGGGCAGGGCAAG 22168
>seq63545
Length=90175
Score = 132 bits (146), Expect = 2e-26
Identities = 215/306 (70%), Gaps = 5/306 (2%)
Strand=Plus/Minus
Query 60337 GTCGGCACGCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 60396
|| |||| || ||||| ||||| |||||||| | ||| || |||| ||||| ||
Sbjct 74069 GTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCG 74010
Query 60397 AACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGAC 60453
||||||||| ||| ||||| | ||| |||| |||| ||| ||| |||
Sbjct 74009 AACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGAC 73950
Query 60454 GGCGACGCCACATTCCTCCGCTGC-ACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 60512
|||||||| |||||||| ||| | | | |||||||| ||||||| |||||||||
Sbjct 73949 GGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGCGGG 73891
Query 60513 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 60572
|| ||| ||| |||||||||| ||| || |||| |||||||||| | |
Sbjct 73890 CTCACTGACGAAGGGCTCCCGCGTCATCGCGCAGGGTCGCCTCCGTCAGCGCTCCTACCA 73831
Query 60573 GACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 60632
| | || ||| | ||||||| ||||||| | ||||| |||||||||||||| ||
Sbjct 73830 GGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTCGAGGTCGACGAGATCGGCCCCTC 73771
Query 60633 GCTGCG 60638
||| ||
Sbjct 73770 GCTCCG 73765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242547659923920
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