Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq32996 96.9 3e-15 seq16715 96.9 3e-15 seq6347 82.4 6e-11 >seq32996 Length=3898 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| || || || || ||||| | || ||| | Sbjct 1088 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 1029 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||||| || || || || | ||| || ||| Sbjct 1028 GATACCATTGACAATGTCAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 969 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | || | ||| |||||||| || ||||||| | || | || ||||| ||| Sbjct 968 CAGCGATTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTATAAC 909 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAG 107778 || || |||||||| || | || |||||||| | ||| ||| Sbjct 908 ATCCAGAAGGAGTCAACTCTCCATTTGGTGTTGCGTTTGAGAG 866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| || || || || ||||| | || ||| | Sbjct 1316 ATGCAAATTTTTGTCAAGACTTTGACGGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1257 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||||| ||||| || || | ||| || ||| Sbjct 1256 GATACCATTGACAACGTCAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGACCAG 1197 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || || || || ||||| | | || |||| || |||||| Sbjct 1196 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCAGATTACAAC 1137 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 ||||| || || || || ||||| Sbjct 1136 ATTCAGAAAGAATCAACCCTGCAC 1113 >seq16715 Length=90750 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || || || || || |||||||| || | || ||||| ||| Sbjct 54111 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACCATCACTTTGGAGGCGGAGAGCTCT 54052 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || || |||||| || || || || | || ||||| Sbjct 54051 -GATACTATTGACAACGTTAAGGCCAAGATTCAGGACAAGGAGGGAATCCCACCAGATCA 53993 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||||| || || | | || |||| |||||||| Sbjct 53992 GCAGAGGCTGATCTTTGCAGGGAAGCAGCTCGAAGATGGTAGGACTTTGGCTGACTACAA 53933 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| |||||||||||||| |||||| Sbjct 53932 CATCCAAAAGGAGTCTACTTTGCAC 53908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG-AGGCTGG 107614 |||||||| ||||||||||| || || ||||| || |||||| |||| || | ||| Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCT-C 54281 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || ||||| ||| | || || || Sbjct 54280 TGACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCA 54221 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| ||||| ||| |||| || | | ||| |||| || ||||| Sbjct 54220 GCAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAA 54161 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||| ||||| || || | || | |||||||| Sbjct 54160 TATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAG 54125 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || || |||||||| || | || |||| | Sbjct 65551 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACCATCACTTTGGAGGTGGAGAGTTCT 65492 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || || || | || ||| ||| Sbjct 65491 GATACCATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGAATCCCGCCGGACCAG 65432 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| || || | | || |||||||||||||| Sbjct 65431 CAGAGGCTGATCTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACTCTGGCGGACTACAAC 65372 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| ||||| Sbjct 65371 ATCCAAAAGGAGTCTACTCTGCAC 65348 >seq6347 Length=16439 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || ||||| || ||||||||| | || ||| | Sbjct 13015 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACCATTACCCTTGAGGTTGAGAGTTCT 12956 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || || ||| ||||| |||||| | || || ||| Sbjct 12955 GACACCATTGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCACCTGACCAG 12896 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| || |||||||| ||||| | | || | || || |||||| Sbjct 12895 CAGAGGTTGATTTTTGCTGGGAAACAGCTTGAGGATGGAAGGACTCTAGCAGATTACAAC 12836 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||||| || || | || ||||| || Sbjct 12835 ATTCAAAAGGAATCAACTCTCCATTTGGTGCTG 12803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398567309496496