Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_023498.1
Length=62466
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 342 2e-89
>seq63210
Length=11074
Score = 342 bits (378), Expect = 2e-89
Identities = 537/763 (70%), Gaps = 28/763 (4%)
Strand=Plus/Plus
Query 56159 TGGCGTGAGCAGCTCGGCACCCTCGGCGGCGGTAACCATTTCATCGAGCTGTGCCTCGAT 56218
||||| | |||||||| || ||||| || ||||| ||||||||| | | ||||||
Sbjct 7136 TGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGAC 7195
Query 56219 CACCTTGACCGGGTGTGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAAGATC 56278
| | |||| ||| |||||||||||||||||||| || || ||||||||||||||||||
Sbjct 7196 GAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATC 7255
Query 56279 GCCCAGCGGCATATCTCTGCGGCGCAG--GGGTATTGCCAGGCGCAAGGGCTGCACGTCC 56336
||||||||||| ||| | ||| || || || | || | || | | | |
Sbjct 7256 GCCCAGCGGCACATCACGATCGCGAAGAAGGCGATGGAGCGGTGGT--GGATCGAGCTGC 7313
Query 56337 CGCACCGCGACCTCGCGTACCTCGTCGAGGGCACTGTCGAGTTCGACCGCTACCTCGTCG 56396
|| ||| |||||| |||||||||||||||||||| |||||||||||| ||| ||| ||
Sbjct 7314 CGGACCCCGACCTGGCGTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCG 7373
Query 56397 AGCTGCGGTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGTTTCG 56456
|||||||||||||||||| |||||| | |||||||| |||||||||||||| |||
Sbjct 7374 AGCTGCGGTGGGCGCAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCG 7433
Query 56457 CGCAGGCGTTCCGGCATTGGATCGGCGCC---GACGCCCCGATCGACGAGCTGGTCGTCG 56513
||||||| | || | | ||||| || |||| ||||| ||
Sbjct 7434 ---------TCCGGCAGCTGCGCGAGGTCATGGACGCGCCCGTCGAGGAGCT------CG 7478
Query 56514 AGACGATCAACACGCATCACAACTACACGCAGAAGGAGCTGCAC-GGCGGCCGTGAGGTG 56572
|| |||||| || ||||||| ||||||| ||| |||| || || || | ||
Sbjct 7479 AGCGAATCAACTGCCACCACAACTTCACGCAGCGCGAGACGCACTGGGGGAAGTCCG-TG 7537
Query 56573 TGGTTGACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCGGC 56632
||| || |||| ||||| |||||| | ||| | | ||| | |||||||| |||||
Sbjct 7538 TGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCCCGGG 7597
Query 56633 AGCATGGGCACTTGCTCGTATGTCGTGACGGGCAAGGGCAATCCCGAGGCGCTGCATTCT 56692
|||||||| ||||| ||||| |||| ||||| | |||| | ||
Sbjct 7598 TCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAGCCGTCGCTCGAGTCG 7657
Query 56693 GCGCCGCACGGCGCCGGTCGCCGGTTCTCGCGCGCCAAGGCCCGAAAGCTGTTCACGGTC 56752
|||||||||| ||||| || | || |||||| | ||| || | ||||||| |
Sbjct 7658 TCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCACGCAC 7717
Query 56753 GACGACCTC--GCCGACCGTATGCAGGGCATCGAGTACCGGCACGGCGAGGCGTGGGTCG 56810
||||| ||| | || || ||| |||||||||||||| || ||| |||| |||
Sbjct 7718 GACGAGCTCCGGGCGGCC--ATGGTCGGCATCGAGTACCGCGACACCGACGCGTTCCTCG 7775
Query 56811 ATGAGATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCCGACAGCCTGG 56870
| ||||| || | || ||||||||||| ||| |||||||| ||||||| | ||| |
Sbjct 7776 ACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGACCTCG 7835
Query 56871 TGACGATCGACGCCGAGCTGCGCCAGGTGCTCAACGTCAAGGG 56913
|| ||||| | |||||| ||| | ||||||| |||||
Sbjct 7836 TGTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 7878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 199611400251408
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