Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq924 98.7 4e-16 seq2254 93.3 2e-14 seq345 93.3 2e-14 seq63145 84.2 8e-12 seq8433 80.6 1e-10 >seq924 Length=22087 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 470 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 411 Query 50170 CTGCTCTACTCCGC 50183 |||||||||||||| Sbjct 410 CTGCTCTACTCCGC 397 >seq2254 Length=33543 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 7681 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 7622 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 7621 CTGCTCTACCCCGC 7608 >seq345 Length=31606 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 2002 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 1943 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 1942 CTGCTCTACCCCGC 1929 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 7569 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 7628 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 7629 CTGCTCTACCCCGC 7642 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||| || Sbjct 2330 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTCTGAGCTACCAAA 2271 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 2270 CTGCTCTACCCCGC 2257 >seq63145 Length=9942 Score = 84.2 bits (92), Expect = 8e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||||||||||| || |||| || |||||||| ||||||||||| Sbjct 8607 TGGTTGCGGGGGCAGGATTTGAACCTACGACCTCTGGGTTATGAGCCCAGCGAGCTACCG 8548 Query 50168 AACTGCTCTACTCCGC 50183 |||||||| || |||| Sbjct 8547 AACTGCTCCACCCCGC 8532 >seq8433 Length=96450 Score = 80.6 bits (88), Expect = 1e-10 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||| |||| | ||||||||||||| | |||| ||| ||||||||| ||||||||| || Sbjct 80419 GTTGTGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTACGAGCTACCAAA 80360 Query 50170 CTGCTCTAC 50178 ||||||||| Sbjct 80359 CTGCTCTAC 80351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181465906164768