Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq32996 96.9 3e-15 seq25243 89.7 5e-13 seq6347 86.0 6e-12 >seq32996 Length=3898 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || ||||| ||||||||||| | ||| | ||||| || ||| Sbjct 1798 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 1857 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || |||||| ||||||| | ||||| || || || || ||||| ||||| |||||| Sbjct 1858 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 1917 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | || | ||||||| | || || |||| ||| | ||||| |||||| Sbjct 1918 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 1977 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| || || |||||||| Sbjct 1978 AGAGTTTTAACAAAGATTTGCAT 2000 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | || | ||| | ||||| ||||| || ||||||||||| Sbjct 2002 CCACCACGTAGACGGAGGACAAGATGGAGGGTAGACTCTTTCTGGATGTTGTAATCAGCA 2061 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| || ||||| |||||| ||||||| | |||||||| ||||| Sbjct 2062 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 2121 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| ||| || ||| | | || | ||||| | || || Sbjct 2122 ATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGACC 2181 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| ||||| | ||| || || || || ||||| Sbjct 2182 TCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAAGATCTGCAT 2228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 137186 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 137245 || ||| ||||||||| || ||||| | || || || || || ||||| || || | Sbjct 658 CTNCTCTTAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAA 717 Query 137246 TTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTA 137305 || ||| ||| || ||||||||||||||| |||||| ||| ||||| || || || | Sbjct 718 GAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGCTCTGGGGGAA 777 Query 137306 TGCCTTCTTTGTC 137318 | || || ||||| Sbjct 778 TACCCTCCTTGTC 790 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 137194 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 137253 |||||||| || ||||| | || || || || || ||||| || || | || ||| Sbjct 871 AAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAGTCCTC 930 Query 137254 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313 ||| || ||||||||||||||| |||||| || ||||| || || || || || || Sbjct 931 CCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCC 990 Query 137314 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373 ||||| ||| ||| ||| | | || | || |||| || || || | || Sbjct 991 TTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTA 1050 Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | ||||| || ||||| || || || || |||||||| Sbjct 1051 ATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1088 >seq25243 Length=7086 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/129 (77%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG-- 137256 || ||| | ||||| || |||||||| || ||||||||||| || || |||| Sbjct 5389 CAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGT--TCGACCA 5332 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| Sbjct 5331 TCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTA 5272 Query 137317 TC--GGTAA 137323 || ||||| Sbjct 5271 TCCTGGTAA 5263 >seq6347 Length=16439 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 137214 TGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTGTTTAC 137272 ||| || || |||||||||||||| || ||| | || || || || | ||||||| Sbjct 13274 TGTGGACTCCTTTTGTATGTTGTAGTCAGCT-AGAGTTCTTCCATCCTCCAACTGTTTAC 13332 Query 137273 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 137332 | ||| |||||| | |||||||| ||||| || ||||| ||||| |||||| | Sbjct 13333 CGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTTGCCT 13392 Query 137333 TTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 137392 | | | || | ||||| | | || || |||| ||| | ||||| |||||||| | Sbjct 13393 TGACATTGTCAATAGTGTCAGAGCTCTCAACCTCAAGAGTAATTGTCTTCCCGGTCAAGG 13452 Query 137393 TTTTTACGAATATTTGCAT 137411 |||| || || || ||||| Sbjct 13453 TTTTCACAAAGATCTGCAT 13471 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||||| | || ||||| | ||| || ||||| || || |||||||| Sbjct 12561 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCA 12620 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || || || || |||||| | || | ||| ||||| || || || Sbjct 12621 AGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 12680 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || ||| || | | || | ||||||| ||| || Sbjct 12681 ATCCCTTCTTTGTCTTGGATCTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCAACC 12740 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||||||||| ||||| || || || || |||||| Sbjct 12741 TCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCATA 12788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488155216684800