Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq63210 354 3e-93 seq63378 140 1e-28 seq63415 95.1 5e-15 >seq63210 Length=11074 Score = 354 bits (392), Expect = 3e-93 Identities = 764/1124 (68%), Gaps = 65/1124 (6%) Strand=Plus/Plus Query 52000 TGCCGTTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTTCGT 52059 ||||||||||| |||||| | ||||||||||| ||||| ||| ||||| || | Sbjct 6804 TGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCA 6863 Query 52060 CTGTTGGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGACA 52119 | || || | |||||||| |||| |||||| |||| || || || ||||| || |||| Sbjct 6864 CCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACA 6923 Query 52120 TCGGCTGCGGCATGATCGCCACACTGACCGCATTCACCCAGGACGACATCGCCGGCCGCG 52179 ||||||||||||||||||| | |||| ||||| ||| |||| | ||| ||| Sbjct 6924 TCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT-GCCCACCG-- 6980 Query 52180 ACCTGGCCGCGCTGCGTGAGTCGATCGAGTCGGCGATCCCCATGTCGGCCGGCGGATACA 52239 ||||| | ||| || ||| ||||||| ||| ||||| |||| || || | | | Sbjct 6981 ACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGA 7040 Query 52240 AC---AAGAGCCTCG--ACCGGTACCCGTTCACCGCCGGCCGGATCGAGCATCTTGAAGA 52294 || |||| | ||| |||| ||| | |||| |||| | || || || Sbjct 7041 ACCGGAAGATCGTCGCCACCG----CCGAGCCCCGC-------ATCGCAGAGCTCGA-GA 7088 Query 52295 CGAAGCGGAACGCCGCAA-CGTCGACCT----GTCACACTCCCCGAAGTGGCGTGAACAA 52349 ||| | | | ||||| | |||||| | | | | | || |||||| | || Sbjct 7089 CGATGGCGGAGGCCGCCGGCTTCGACCCCGCGGGCGCGCACGGCGG-GTGGCGGAACCAG 7147 Query 52350 CTCGGCACACTCGGCGGCGGCAACCATTTCATCGAACTGTGCGTCGACCACCGCGGCTGC 52409 ||||| || ||||| |||||||| |||||||| | | | ||||| | | | | Sbjct 7148 CTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGACGAGCAGGACCAG 7207 Query 52410 GTGTGGCTGTTCCTGCACTCCGGTTCACGTGGCGTCGGCAACAAGATCGCCCAGAAGCAC 52469 || |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct 7208 GTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCAC 7267 Query 52470 ATCAAGATCGCG--CAAGCCGAATGCGACCTGTACGGCATCGAACTGCCCGGCGGCAACA 52527 |||| ||||||| ||| || ||| || | || | ||||| ||||| | || Sbjct 7268 ATCACGATCGCGAAGAAGGCG-ATG-GAGCGGTGGTGGATCGAGCTGCCGG------ACC 7319 Query 52528 AGGATCTGGCGTACCTCGTCGAAGGTGAACCGTCGTTTGACGCGTACCTGAATGAGCTGC 52587 || ||||||||||||||||| || || ||| ||| |||| | ||||||| Sbjct 7320 CCGACCTGGCGTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGC 7379 Query 52588 GTTGGGCGCAACAGTTCGCACTGTTCAACCGCGACGAAATGATGGACCGGTACCGGCAGG 52647 | |||||||| || ||||| || |||||||||| || |||||||||||| | Sbjct 7380 GGTGGGCGCAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGG--------GT 7431 Query 52648 CGTTCGCACGCTGGATGGGCATCGGTGTCGATGAGGCGCCGGTCGTCGAAATCGCCGGCG 52707 ||| || |||| || ||| || ||||| |||| || ||| ||| Sbjct 7432 CGTCCGGCAGCTG-------CGCGAGGTCATGGACGCGCCCGTCGAGGAGCTCG--AGCG 7482 Query 52708 AACGTGTCAACGCGCACCACAACTACACGGTGCAGGA-ATGCGTCGACGGTGAGCTGGTG 52766 || ||||| |||||||||| |||| || || | || | || || ||| Sbjct 7483 AA----TCAACTGCCACCACAACTTCACGCAGCGCGAGACGC-ACTGGGGGAAGTCCGTG 7537 Query 52767 TGGGTGACCCGCAAGGGTGCCATCAGCGCGAAGCTCGGCGAGCGTGGCCTGATCCCGGGA 52826 |||||| |||| ||||| || ||| |||||| || || ||||||||||| || Sbjct 7538 TGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCCCGGG 7597 Query 52827 AGCATGGGCACCGCATCCTATGTCGTCACCGGCAAGGGCAACCCGCAGGGTCTGCAGTCT 52886 ||||||||||| || || |||||| ||| |||||| || | || |||| Sbjct 7598 TCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAGCCGTCGCTCGAGTCG 7657 Query 52887 GCGCCTCACGGCGCCGGCCGAAGGTTCTCCCGAACCAAAGCTCGCAAGCTGTTCACCGTC 52946 |||| ||||| ||||| || || ||| || | || || | |||||| | Sbjct 7658 TCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCACGCAC 7717 Query 52947 GACGACCT--GGCTGACCGTATGCGCGGCATCGAGTACCGCCACGGTGAGGCGTGGGTCG 53004 ||||| || || | || ||| |||||||||||||||| || || |||| ||| Sbjct 7718 GACGAGCTCCGGGCGGCC--ATGGTCGGCATCGAGTACCGCGACACCGACGCGTTCCTCG 7775 Query 53005 ACGAAATCCCGGACGCTTACAAGCCGATCGACGTTGTGATGCACGACGCCGGGGAACTCG 53064 |||| ||||||| || ||||||||||||||| |||||| ||||||| || |||| Sbjct 7776 ACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGACCTCG 7835 Query 53065 TGTCCGTTGACGCTGA-ACTGCGTCAAATCGTTAACGTCAAGGG 53107 ||| || | || | ||||| || ||||| ||||| ||||| Sbjct 7836 TGT-CGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 7878 >seq63378 Length=15302 Score = 140 bits (154), Expect = 1e-28 Identities = 301/446 (67%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 12442 ATCGACGACGCGAAGTTCAAGCTGCAAGGTCTCGGCAACAC--CGCCGAAC-AGGTGCAG 12498 ||||||||||||||| |||||| || ||| || || || |||| | | | Sbjct 11601 ATCGACGACGCGAAGGGCAAGCTCGCCGGCCTC---AAGACGTCGACGAAGGACATCGCG 11657 Query 12499 TCCATCATGGACAACGCGCTGGCTGCGGTGAAGGGCACCGCGTTCGGCCTCGACGAGGCA 12558 || |||||||||| ||| ||| | || || ||||| ||||| |||| ||| ||| Sbjct 11658 TCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCA 11717 Query 12559 GCCACCACGGCCGCATC---CGCGGTGGCCGCCGGCATCAAGCCCGGGCAACAGCTCACC 12615 || | | ||||| ||| || |||||||| ||||||||||| || |||||| Sbjct 11718 GCTGGC---GTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACG 11774 Query 12616 GACTACCTGAAGTTGGTCGGCGACACCGCGGCGATTGCCGGCACATCGCTGGCCGACATG 12675 | ||||| ||| | || |||| | || | || || || ||||| | ||| ||| Sbjct 11775 AAGTACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATG 11834 Query 12676 GGCGCGATCTTCAACCGTGTGCAGACGTCGGGCAAGGCGTTCACCGGCGATCTTAACCAG 12735 ||| ||||| ||||| | || ||||||| | ||| | | | || |||||| Sbjct 11835 GGCTCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAG 11894 Query 12736 CTCGCCGACCGCGGCCTGCCTGTATTTCAGTGGCTTCAAGAGGAATACGGCGTAAGCGGC 12795 ||||| ||||| ||| | || | || |||||||| || |||| |||||||| || | Sbjct 11895 CTCGCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCC 11954 Query 12796 GCAGCGCTGGCGAAGATGGTCGAAAAGGGCAAGGTCGACGCGGCAACGTTCCAACGTGTT 12855 | ||| || ||||||| |||||||||||||| |||| || |||| || Sbjct 11955 GACAAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTC 12014 Query 12856 GTCGCGGAACGGATCGGCGGCGCCGC 12881 ||| ||| ||||||||||| || Sbjct 12015 ATCGAGGAGAACATCGGCGGCGCGGC 12040 >seq63415 Length=16791 Score = 95.1 bits (104), Expect = 5e-15 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 597 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 5448 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201290096731008