Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq62752 390 8e-104 seq63531 159 2e-34 >seq62752 Length=6345 Score = 390 bits (432), Expect = 8e-104 Identities = 917/1352 (68%), Gaps = 84/1352 (6%) Strand=Plus/Minus Query 68455 TTCGGTCTGCAGGCCTACATCCAGAAGCATCTGATGGATGCCTTCGAGCCGTTCTTCGCC 68514 ||||| |||||||| | ||||||| || | || || | | ||||||||||||| Sbjct 3001 TTCGGCCTGCAGGCGTTCATCCAGCGCTCCCTCGTCGAGGCGTGGGCGCCGTTCTTCGCC 2942 Query 68515 GCGGATGAAGACCTCGTGGCGGATCTGTACGAGAAG-CGCTTGGAGCAGG--TGCTG-GG 68570 || || || ||| || || | |||| |||| || |||| |||| | || || Sbjct 2941 GCCGACGAGGACGAGGTCGCCGGCCTGTTCGAGCAGGCGCTC----CAGGGCTACTTCGG 2886 Query 68571 CCCGAATGATATCGGTTCGGATCACATCCGCGAACTCCATCGGCTGGGGTATCTGCCGCT 68630 |||||| | ||||| | || ||| |||||| || || || ||||| || |||||||| Sbjct 2885 CCCGAACCACATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCT 2826 Query 68631 GAAGTTCTGCGCAGTGCCGGAGGGCACGCTTGTCCCGATCCGGGTCCCCAGCTTCACGGT 68690 || || |||| |||| |||||||| || | |||||| | ||| ||| | | ||||| Sbjct 2825 CGAGATCCGCGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTGACGGT 2766 Query 68691 CGAGAACACGGAC-CCGAGGTTTTTCTGGCTGACGAATTACATTGAAACCGGCTTGTCGG 68749 ||||||||| | | ||| ||| ||||||||| |||| ||||| || |||| |||| | Sbjct 2765 CGAGAACACCGTCGACGA-GTTCTTCTGGCTGCCGAACTACATCGAGACCGCACTGTCTG 2707 Query 68750 CCGGGTACTGGCAGGCCAGCACGTCCGCCACGATCGCCCACGAGTACCGCAAGGTTCTGG 68809 | | |||||| || ||| |||||||| || | |||||||||| | | ||| Sbjct 2706 CGTCGATCTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTACCGCGACCTCATGG 2647 Query 68810 AGGCGGCGGCCATTCGCACCGGGGC---TCCGCTGGAGGCCGTGGA-TTGGCAGTGCCAC 68865 ||| |||| |||||||| || ||| | ||| | | || || || | |||| Sbjct 2646 AGGACTGGGCCGCCCGCACCGGTGCAGATCC-CGCGAG--CATCGACTTCGCCG-CCCAC 2591 Query 68866 GACTTCTCCTATCGGGGGATGTCTTCGCAT-GAGACCGCGGCGGCGTCCGGCGCGGCCCA 68924 |||||||| | || ||| ||| |||| ||| | || |||||| ||| || | || Sbjct 2590 GACTTCTCGTTCCGCGGGCAGTC-GAGCATCGAGTCGGCCGCGGCGGGCGGTGCCGGACA 2532 Query 68925 CCTGCTGTCGTTCAACGGCACCGACACCCTCGTGGCGATGGACTTCATCGACCGCTACTA 68984 |||||| |||||| |||||||||| | | | | |||||||||||||||||||| Sbjct 2531 CCTGCTCTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTA 2472 Query 68985 TGGCGG-GCCA-----TATATTGCCGGGTCAGTTGCCGCAACCGAGCACTCAGTGATGTG 69038 ||| | || | | || | | || |||| ||||||||| || ||||| Sbjct 2471 CCCCGGCGACAACGGCTGGGTGGCGGCGAGCGTCCCCGCGACCGAGCACAGCGTCATGTG 2412 Query 69039 TACCGGTATCGAGACCAACGGTGAGCTGGAGACCTTCTCCCGCCTACTGGACCTGTACCC 69098 || || || |||| ||||||||||||||| | | | || ||| ||||||| Sbjct 2411 ---CGTCCGCGGCGCCGACGGCGAGCTGGAGACCTTCGCGCAGATCCTCGACGTGTACCC 2355 Query 69099 CACGGGCATCGTCTCGGTGGTGTCGGACACCTTCGACCTGTGGCGGGTGCTCACCGAGTA 69158 |||||||||||||||| |||| ||| ||||||||||| ||| ||||||||| Sbjct 2354 GACGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGACCTGTTCAAGGTCCTCACCGAGAC 2295 Query 69159 CCTCCCGGCGCTGAGGGGCAAGATCCTCGCCCGCGACGGCAAGCTGGTCATCCGGCCGGA 69218 |||||| ||| | || | ||| |||||||||||||||||| |||||||| ||||| Sbjct 2294 GCTCCCGCAGCTCAAGGACCGCATCACCGCCCGCGACGGCAAGCTCGTCATCCGTCCGGA 2235 Query 69219 TTCCGGCGACCCGGAGAAGATCATC----------TG--CGGCGACCCGAATGGCGAG-- 69264 || |||||||||| | ||| || || ||||| ||| | | |||| Sbjct 2234 CTCGGGCGACCCGGTCGACATCGTCACCGGCACCGTGCACGGCGTCCCCGAGGCCGAGCT 2175 Query 69265 -ACC-CG---------AGCCGAACGA----TACGGCGTCATTACACTGCTGGCCAACGAG 69309 ||| || |||| |||| | |||||| | ||| || | ||||| Sbjct 2174 CACCGCGCCCGGTCGCAGCC--ACGAGGAGAAGGGCGTCGTCGAACTCCT---CGACGAG 2120 Query 69310 ---TTTGGCTACACCGTTAACGACGCGGGCTACGCGGAGCTCAACCCCCACGTGGGTGCC 69366 || ||| |||| || |||||| ||||| | || |||| ||| ||| | || | | Sbjct 2119 CTCTTCGGCCACACGGTCAACGACCAGGGCTTCAAGGTGCTCGACCAGCACATCGGCGTC 2060 Query 69367 ATTTACGGCGACTCCATCACGGTGGAGCGGGCCCGCGCCATCACCGAGAACCTGGCGAGC 69426 || ||||||||| |||||| | || || |||||| ||| |||| ||| || Sbjct 2059 ATCTACGGCGACAGCATCACCCTCGACCGTGCCCGCCGGATCTACGAGCGCCTCGCCGCG 2000 Query 69427 AAGGGTTTCGC-CTCGTCGAACATCGTCTTCGGCGTGGGCTCCTACACCTACCAGATGAA 69485 ||||| | | | || | |||||||| ||||| | || || ||||| |||||| | Sbjct 1999 AAGGGCTACTCGAGCGAC-AACATCGTGCTCGGCATCGGGTCGTACACGTACCAGTACAT 1941 Query 69486 CACCCGCGACACCCTCGGCTCCGCCATGAAGGCTACCTGGGCAGAGGTCAACGGCAAGGG 69545 || || |||| ||||||| |||| ||||||| ||||||||| |||| ||||| || Sbjct 1940 GACGCGGGACAACCTCGGCAGCGCCGTGAAGGCCACCTGGGCACTGGTCGACGGCGAGCC 1881 Query 69546 CGTGAACCTTCTGAAAGACCCGGTCACCGACGACGGGACGAAGAAGAGCGCCACCGGCCG 69605 ||| || | | ||| |||||| |||| | ||| ||||||||||||| ||||| Sbjct 1880 CGTCGACATCCAGAAGGACCCGAAGACCGGCAGCGG---CAAGAAGAGCGCCAAGGGCCG 1824 Query 69606 CCTGGCGGTACTGCCCACCG-GCCCCGACGGG-GAGTTGGAACTGCACGAGCAGGCGGGC 69663 | | || ||| ||||| | | | |||| ||| | | | ||| |||||| | Sbjct 1823 CATCGC---CCTG--CACCGCGACGAGTCGGGCGAGATCCGGCAGACCGACCAGGCGACC 1769 Query 69664 GGCTACCAGGAG--AAGCATTCGGTCCTGCAGCCGGTGTGGGTGGACGGCAAGTTCGTCG 69721 | | || | ||| | || | | || |||||||||||||| ||||| | | | || Sbjct 1768 GCCGACGACGAGGCGACCAGCC--TGCTCCAGCCGGTGTGGGTCGACGG-ACGCTTCACG 1712 Query 69722 AG-CGCCAGACCTTCGCCAATGTCCGCGAGAC 69752 | | |||| | |||||| | |||||||| || Sbjct 1711 CGCCTCCAGTCGTTCGCCGACGTCCGCGACAC 1680 Score = 113 bits (124), Expect = 3e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 68038 CGGTCGGTACCTCGTTGTGGATGACATCTGCGACGGCGGCGGAACCTTCATGGGCCTCGC 68097 ||| |||| |||||| || || ||||||||||||||||| || ||||||||||||||||| Sbjct 3469 CGGCCGGTTCCTCGTCGTCGACGACATCTGCGACGGCGGTGGCACCTTCATGGGCCTCGC 3410 Query 68098 TGACGCCACCGGCCTGCCCCGCGAAAAGCTGGGGCTGTGGGTTACCCACGGAATCTTTTC 68157 | | |||||||||||| || ||||| || ||||| | ||||| |||| || Sbjct 3409 GGGCTGCACCGGCCTGCCGAAGGAGCGCCTGGGCCTCTGGGTCTCGCACGGCGTCTTCTC 3350 Query 68158 CGGCAATGCC-CACCTTTTGCGCAACTGTTACGAGCAGATCATCACCACCGATTCCCACC 68216 |||| ||| ||| | || | || | || ||||| |||||||||| || ||| Sbjct 3349 CGGCCGGGCCGCACAGCTCGC-CGACCACTTCGGCGAGATCGTCACCACCGACTCGTACC 3291 Query 68217 CCGGGCATAAC 68227 ||| ||| ||| Sbjct 3290 CCGCGCAGAAC 3280 >seq63531 Length=42858 Score = 159 bits (176), Expect = 2e-34 Identities = 237/329 (72%), Gaps = 13/329 (4%) Strand=Plus/Plus Query 94447 GCGCCCTGTATCCGGATGGCGCTGCG-CGCCCCCACCGGCAGGAATAACCCGTCACCCAT 94505 |||||||| | ||||| || || || || ||||| ||||||||| | | |||| ||| Sbjct 25842 GCGCCCTGCACGCGGATCGC-CTTCGACGACCCCATCGGCAGGAAGAGCGCGTCGCCCTG 25900 Query 94506 TCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGGGACGC 94565 || ||||||| ||||| || || ||| ||||| || ||| ||||||| ||| Sbjct 25901 CCCGATGAGCTTGTCGGCGCCCGGCTGGTCGAGGATGACGCGGGAGTCGGTGA----CGC 25956 Query 94566 T-GTG---GCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACAT 94621 | ||| ||||| | || |||||||||||||| |||||||||||| || || || | Sbjct 25957 TCGTGACCGCGAAGGCGAGGCGCGAGGGCACGTTCGCCTTGATGAGGCCGGTGACGACGT 26016 Query 94622 CCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCG 94681 | || ||||| ||||| |||||||||||||| || || ||||| || || || ||| | Sbjct 26017 CGACAGAGGGTCGCTGGGTCGCCAGGACGAGGTGGATCCCGGCGGCGCGGGCGAGCTGGG 26076 Query 94682 CGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGA 94741 ||||||||| || |||| || || | | || | | | |||||||||||||| Sbjct 26077 TGATGCGGACGATCGACTCCTCGACGTC--GCGCGGGGCGA-CGAGCATGAGGTCCGCGA 26133 Query 94742 GTTCATCCACCACTACCACGATGTAGGGG 94770 | ||||| || || || | | ||| ||| Sbjct 26134 GCTCATCGACGACGACGAGCAGGTACGGG 26162 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 94983 GAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGC 95042 ||||||||| | ||| ||||||| ||| |||||||| || ||||||| || || Sbjct 26435 GAGCAGCGACGTGATCATCGAGTTGACGAACGACGACTTGCCGGAACCGGTCGATCCGGC 26494 Query 95043 CACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGAGACGTCCTTACCCTCGACGTCCTT 95102 || ||||| ||||||||||| |||||||| | |||| |||||||||||||| Sbjct 26495 GACGAGCAGGTGCGGCATCTTCGCCAGGTTGGCGACGACGAAGCCGCCCTCGACGTCCTT 26554 Query 95103 GCCCACTGCCACGGTCAACGGATG 95126 ||| || | | |||| ||| || Sbjct 26555 GCCGACGCCGATCGTCATCGGGTG 26578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339857697949952