Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq63210 370 4e-98 >seq63210 Length=11074 Score = 370 bits (410), Expect = 4e-98 Identities = 782/1140 (69%), Gaps = 56/1140 (5%) Strand=Plus/Plus Query 49369 CAGGCCAAGCA-GACCGCCGGCCTGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGA 49427 |||||| ||| |||||| || |||||||||| |||||| |||| || ||||| || Sbjct 6782 CAGGCCC-GCACGACCGCTCGCATGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGA 6840 Query 49428 CGCGCACGCCGGCAAGGGTTCATCGGTCGGCACCGTCATCCCGACTATCGACGCCGTGAT 49487 ||| ||| |||| || | | || ||| | ||||||||||| ||| ||| | || Sbjct 6841 CGCCCACCTCGGCCTCGGCGCCACCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCAT 6900 Query 49488 CCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGATGATCGCCGCCCGCACCATCTACAC 49547 ||||| || || |||||||||||||||||||| |||||||| | ||| ||| | ||| Sbjct 6901 GCCGGCGGCCGTCGGCGTGGACATCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCAC 6960 Query 49548 CGAGGACGACCTGGACGGCCGGGACCTCGCCGCGCTGCGGCACGCCATCGAGGGCGCGAT 49607 ||| ||||||| | | ||||| | ||| || | |||||| | || || Sbjct 6961 GAAGGGCGACCTGCCCACC---GACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCAT 7017 Query 49608 CCCGCTGTCGCCGGGCAACTACAACCGCGACACCGATCGTTTCCCGTGCACCGCCGG--- 49664 ||||||||| |||| | ||||| | |||||| || ||||||| Sbjct 7018 CCCGCTGTCCGCGGGGGCGTCGAACCGGAA----GATCGTCGCC-----ACCGCCGAGCC 7068 Query 49665 CCGTATCGCCACCCT-GACCGACCTCGCCGGCCGCGGCACGGACGGCATCCCAGCGGTTG 49723 ||| ||||| || || ||| | ||| || || ||| | | ||| |||| | Sbjct 7069 CCGCATCGCAGAGCTCGA--GACGATGGCGGAGGCCGC-CGG-CTTCGACCCCGCGGGCG 7124 Query 49724 ACCTGTCGCACTCACCGAAGTGGCGGGAACAGCTCGGAAGCCTCGGCGGCGGTAACCATT 49783 ||||| || ||||||| | |||||||| | ||||| || ||||| | Sbjct 7125 ------CGCACGG--CGG-GTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACT 7175 Query 49784 TCATCGAACTATGCCTGGACGAAACCGGCCGGGTGTGGCTGTTCCTGCACTCCGGGTCGC 49843 ||||||| | | ||| ||||| | || ||| ||||||||||||||||||||||| | Sbjct 7176 TCATCGAGGTCTCCCTCGACGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCAC 7235 Query 49844 GTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAAGGTCGCGCAGAAACTCATGGACC 49903 | ||||||||||||||||||||||| |||||||| | ||||| |||| ||||| | Sbjct 7236 GCGGCGTCGGCAACAAGATCGCCCAGCGGCACATCACGATCGCGAAGAAGGCGATGGAGC 7295 Query 49904 GCTGGTGGATTCAGCTCCCAAGCCCCGACCTGGCGTA-CTTGCCGCAAGGCACACCGGAG 49962 | |||||||| |||| || ||||||||||||||| || | || | ||||| || ||| Sbjct 7296 GGTGGTGGATCGAGCTGCCGGACCCCGACCTGGCGTACCTCGTCG-AGGGCACGCCCGAG 7354 Query 49963 TTCG-CCG--ACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGC 50019 |||| ||| || ||| || ||||||| |||||||||| |||||||| |||||| Sbjct 7355 TTCGACCGGTAC-ATC-GC-CGAGCTGCGGTGGGCGCAGCACTTCGCGCTCCTCAACCGC 7411 Query 50020 GCCGAAATGATGGACCGTTTCGCTATCGTGTTCGGCGAGTGGATCGGGCACCCCACCGGC 50079 | || ||||||||||| ||| || | ||| | || || | || | ||| | Sbjct 7412 GAGGAGATGATGGACCGGGTCG--TCCGGCAGCTGCGCGAGG-TCATGGACGCGCCCGTC 7468 Query 50080 GGGGCGCTGGTGGAAACCACGGTGAACACGCACCACAACTACACGACGCAGGAACGGCAC 50139 | || ||| | | || | ||| |||||||||| |||| || || |||| Sbjct 7469 GAGGAGCTCGAGCGAA------TCAACTGCCACCACAACTTCACGCAGCGCGAGACGCAC 7522 Query 50140 GGCGGCCGCGACGTGTGGCTGACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATG 50199 | || ||||||| || |||| |||||||| ||| | ||| | || || | Sbjct 7523 TGGGGGAAGTCCGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCC 7582 Query 50200 GGCCTGATCCCGGGCAGCATGGGCACCCCGTCATACGTGGTGCGCGGCAAGGGCAACCCG 50259 ||||||||||| || ||||||||| |||| ||||| || ||| |||||| | Sbjct 7583 GGCCTGATCCCCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAG 7642 Query 50260 GCCGGGCTGTGCTCGGCGCCGCACGGCGCCGGCCGCCGGCATTCCCGCACCCAAGCCCGG 50319 | ||| ||| |||||||||| ||||| || | | | || || | || ||| Sbjct 7643 CCGTCGCTCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGG 7702 Query 50320 AAGCTGTTCACCGAGGCCGACCTC--GCCGACCGGATGCAGGGTATCGAGTACCGGCACG 50377 | |||||| | | ||| ||| | || || ||| || ||||||||||| || Sbjct 7703 CGGACGTTCACGCACGACGAGCTCCGGGCGGCC--ATGGTCGGCATCGAGTACCGCGACA 7760 Query 50378 GGGACGCGTGGGTTGACGAAATCCCGGACGCCTACAAGCCAATTCAGACC--GTGATGGC 50435 ||||||| | ||||| ||||||| || |||||||| || |||| |||||||| Sbjct 7761 CCGACGCGTTCCTCGACGAGATCCCGGCGGCGTACAAGCCGAT--CGACCAGGTGATGGC 7818 Query 50436 CGACGCCGCCGACCTCGTGGAGGTTGTGCACGAGCTGCGGCAGATTCTCAACGTCAAGGG 50495 |||||||||||||||||| | | |||| |||||||||||| ||||||| ||||| Sbjct 7819 GGACGCCGCCGACCTCGTGTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 7878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193613515502400