Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_023747.1 Length=59672 Score E Sequences producing significant alignments: (Bits) Value seq63210 342 2e-89 seq63378 149 2e-31 >seq63210 Length=11074 Score = 342 bits (378), Expect = 2e-89 Identities = 746/1102 (68%), Gaps = 39/1102 (4%) Strand=Plus/Plus Query 54006 TGCCTTTCGTTTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGTAAGGGCAGCA 54065 |||| ||||| | ||||| |||| || ||||| || || || |||| ||| || Sbjct 6804 TGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCA 6863 Query 54066 GTGTCGGCACGGTGATCCCAACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATA 54125 || ||| |||| ||||| ||| ||||| | || ||||||||||||||||| || | Sbjct 6864 CCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACA 6923 Query 54126 TTGGTTGCGGCATGATCGCGGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCA 54185 | || |||||||||||||||| ||| ||| || |||| | ||| || | | | Sbjct 6924 TCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT---GCCCACCG 6980 Query 54186 AGCTGTCGGATCTGCGGGAGTCGATCGAGTCGGCTATCCCGATGAGCGCCGGGGGATACA 54245 | ||| || || || ||| ||||||| ||| |||||| || ||| |||| | | Sbjct 6981 ACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGA 7040 Query 54246 AC---AAGAGCCTGA--ACCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCAGCT 54300 || |||| | | |||| ||| | | ||| ||| || | || | Sbjct 7041 ACCGGAAGATCGTCGCCACCGCC--GAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGA 7098 Query 54301 CGTCGCTACCCGGTTCGACGTCGACCTGTCTCACTCCCCGAAGTGGCGGGAGCAGCTCGG 54360 | ||| | | |||||| || | | | | | | || ||||||| | |||||||| Sbjct 7099 GGCCGC---CGGCTTCGACCCCG--CGGGCGCGCACGGCGG-GTGGCGGAACCAGCTCGG 7152 Query 54361 CACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGACCACCTCGACCGTGTGTG 54420 ||||| || || || |||||||||||| | | ||| ||| | | |||| || || Sbjct 7153 GACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGACGAGCAGGACCAGGTCTG 7212 Query 54421 GTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGATCGCGCAGAAGCACATTCA 54480 | |||||||||||||||| || || || ||||| ||||||||||| ||| |||||| Sbjct 7213 GCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACATCAC 7272 Query 54481 GGCCGCGCAG--GGCTATTGCCAGGCGAACGGGCTGCACGTGCCGCACAAGGATCTGGCG 54538 | |||| || ||| || | || | || | | ||||| || || |||||| Sbjct 7273 GATCGCGAAGAAGGCGATGGAGCGGTGGT--GGATCGAGCTGCCGGACCCCGACCTGGCG 7330 Query 54539 TACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTGCGTTGGGCGCAG 54598 |||||||||||||||||| |||||||||||| ||| ||| || |||| ||||||||| Sbjct 7331 TACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCAG 7390 Query 54599 CGGTTTGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTTCAGGCAT 54658 | || ||| | |||||||| || ||||||||||| ||| | | | | | | Sbjct 7391 CACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCTGCGCGA- 7449 Query 54659 TGGGTCGGGGCCGACCAGGGCGCCGAGCTGGTCGTCGAGACCATCAACGCGCACCACAAC 54718 |||| || || | | || ||||| |||| |||||| ||||||||| Sbjct 7450 --GGTCATGGACGCGCCCGTCGAGGAGCT------CGAGCGAATCAACTGCCACCACAAC 7501 Query 54719 TACACGCAGAAGGAGCGGCAC-GGCGACCGTGACGTGTGGCTGACCCGTAAGGGTGCGAT 54777 | ||||||| ||| |||| || | || ||||||| || |||| ||||| ||||| Sbjct 7502 TTCACGCAGCGCGAGACGCACTGGGGGAAGTC-CGTGTGGGTGTCCCGGAAGGGCGCGAT 7560 Query 54778 CGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGT 54837 | | ||||| | ||| | |||||||| || || |||||||||||| ||||| || Sbjct 7561 CCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCCCGGGTCGATGGGCACCGCGTCGTACGT 7620 Query 54838 CGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGC---TCGGCGCCGCATGGTGCGGGCCG 54894 ||| ||| ||||| | || ||| | | ||| ||||||| ||||| || || Sbjct 7621 CGTCGAGGGCCTCGGCAA---CAAGCCGTCGCTCGAGTCGTCGCCGCACGGTGCCGGGCG 7677 Query 54895 CCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCGACGACCTCGAAGCGCGTAT 54954 | || |||||| || ||| || | ||||||| |||||| ||| ||| || Sbjct 7678 GCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCACGCACGACGAGCTCCGGGCGGCCAT 7737 Query 54955 GACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCATACAA 55014 | ||||||||||||||| | ||| |||| |||||||||| || | || ||||| Sbjct 7738 GGTCGGCATCGAGTACCGCGACACCGACGCGTTCCTCGACGAGATCCCGGCGGCGTACAA 7797 Query 55015 GCCGATCGACGTCGTGATGCACGACGCCG-AGACGCTGGTGTCGGTGGATGCCGAGCTGC 55073 |||||||||| |||||| ||||||| ||| || |||||| | | ||||| Sbjct 7798 GCCGATCGACCAGGTGATGGCGGACGCCGCCGAC-CTCGTGTCGATCCGGCACACGCTGC 7856 Query 55074 GGCAGCTCTTGAACGTCAAGGG 55095 ||||| || | ||||| ||||| Sbjct 7857 GGCAGATCGTCAACGTGAAGGG 7878 >seq63378 Length=15302 Score = 149 bits (164), Expect = 2e-31 Identities = 261/380 (69%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 12590 ATCATGGACAACGCCCTGGCCGCGGTTGATAAGACGGCGTTCGGGCTCGACGAGGCCGCC 12649 |||||||||| ||||||| | || ||| || ||||| |||| ||| || || Sbjct 11661 ATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCAGCT 11720 Query 12650 ACCACAGCGGCGTCCGCGGTGGCCGCCGGTATCGAGCCGGGCGAGCGGCTGACCGGCTAC 12709 | || || ||| || |||||||||||| |||| ||| || ||| || ||| Sbjct 11721 GGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAGTAC 11780 Query 12710 CTGAAAAGCGTCGCCGACACCGCGGCTATCGCGGGCACGTCAATGGCCGACATGGGCGCA 12769 || || | ||||||| | || | ||||| || || | | ||| |||||| | Sbjct 11781 CTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGCTCG 11840 Query 12770 ATCTTCAACAAGGTGCAGACCTCCGGCAAGGCGTTCACTGGCGATCTCAACATGCTTTCT 12829 ||| |||||||| | ||| |||||||| | ||| | | | |||||| ||| || Sbjct 11841 ATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTCGCT 11900 Query 12830 GACCGTGGCCTGCCGATATTCACTTGGTTGCAAGAGGAATACGGCGTAACCGGCGAGGCG 12889 ||||| ||| | ||||| ||| ||| |||| |||| |||||||| ||| ||| | Sbjct 11901 GACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGACAAG 11960 Query 12890 CTCTCGAAGATGGTCAGCGAGGGCAAGGTCGACGCCGCGACATTCCAGAAGGTTGTTGCC 12949 |||||| ||||||| |||||||||||||| | || || |||| ||||| | | Sbjct 11961 CTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCATCGAG 12020 Query 12950 GAGCGCATCGGCGGCGCCGC 12969 ||| |||||||||||| || Sbjct 12021 GAGAACATCGGCGGCGCGGC 12040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190684531518912