Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_023747.1
Length=59672
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 342 2e-89
seq63378 149 2e-31
>seq63210
Length=11074
Score = 342 bits (378), Expect = 2e-89
Identities = 746/1102 (68%), Gaps = 39/1102 (4%)
Strand=Plus/Plus
Query 54006 TGCCTTTCGTTTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGTAAGGGCAGCA 54065
|||| ||||| | ||||| |||| || ||||| || || || |||| ||| ||
Sbjct 6804 TGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCA 6863
Query 54066 GTGTCGGCACGGTGATCCCAACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATA 54125
|| ||| |||| ||||| ||| ||||| | || ||||||||||||||||| || |
Sbjct 6864 CCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACA 6923
Query 54126 TTGGTTGCGGCATGATCGCGGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCA 54185
| || |||||||||||||||| ||| ||| || |||| | ||| || | | |
Sbjct 6924 TCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT---GCCCACCG 6980
Query 54186 AGCTGTCGGATCTGCGGGAGTCGATCGAGTCGGCTATCCCGATGAGCGCCGGGGGATACA 54245
| ||| || || || ||| ||||||| ||| |||||| || ||| |||| | |
Sbjct 6981 ACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGA 7040
Query 54246 AC---AAGAGCCTGA--ACCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCAGCT 54300
|| |||| | | |||| ||| | | ||| ||| || | || |
Sbjct 7041 ACCGGAAGATCGTCGCCACCGCC--GAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGA 7098
Query 54301 CGTCGCTACCCGGTTCGACGTCGACCTGTCTCACTCCCCGAAGTGGCGGGAGCAGCTCGG 54360
| ||| | | |||||| || | | | | | | || ||||||| | ||||||||
Sbjct 7099 GGCCGC---CGGCTTCGACCCCG--CGGGCGCGCACGGCGG-GTGGCGGAACCAGCTCGG 7152
Query 54361 CACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGACCACCTCGACCGTGTGTG 54420
||||| || || || |||||||||||| | | ||| ||| | | |||| || ||
Sbjct 7153 GACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGACGAGCAGGACCAGGTCTG 7212
Query 54421 GTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGATCGCGCAGAAGCACATTCA 54480
| |||||||||||||||| || || || ||||| ||||||||||| ||| ||||||
Sbjct 7213 GCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACATCAC 7272
Query 54481 GGCCGCGCAG--GGCTATTGCCAGGCGAACGGGCTGCACGTGCCGCACAAGGATCTGGCG 54538
| |||| || ||| || | || | || | | ||||| || || ||||||
Sbjct 7273 GATCGCGAAGAAGGCGATGGAGCGGTGGT--GGATCGAGCTGCCGGACCCCGACCTGGCG 7330
Query 54539 TACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTGCGTTGGGCGCAG 54598
|||||||||||||||||| |||||||||||| ||| ||| || |||| |||||||||
Sbjct 7331 TACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCAG 7390
Query 54599 CGGTTTGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTTCAGGCAT 54658
| || ||| | |||||||| || ||||||||||| ||| | | | | | |
Sbjct 7391 CACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCTGCGCGA- 7449
Query 54659 TGGGTCGGGGCCGACCAGGGCGCCGAGCTGGTCGTCGAGACCATCAACGCGCACCACAAC 54718
|||| || || | | || ||||| |||| |||||| |||||||||
Sbjct 7450 --GGTCATGGACGCGCCCGTCGAGGAGCT------CGAGCGAATCAACTGCCACCACAAC 7501
Query 54719 TACACGCAGAAGGAGCGGCAC-GGCGACCGTGACGTGTGGCTGACCCGTAAGGGTGCGAT 54777
| ||||||| ||| |||| || | || ||||||| || |||| ||||| |||||
Sbjct 7502 TTCACGCAGCGCGAGACGCACTGGGGGAAGTC-CGTGTGGGTGTCCCGGAAGGGCGCGAT 7560
Query 54778 CGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGT 54837
| | ||||| | ||| | |||||||| || || |||||||||||| ||||| ||
Sbjct 7561 CCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCCCGGGTCGATGGGCACCGCGTCGTACGT 7620
Query 54838 CGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGC---TCGGCGCCGCATGGTGCGGGCCG 54894
||| ||| ||||| | || ||| | | ||| ||||||| ||||| || ||
Sbjct 7621 CGTCGAGGGCCTCGGCAA---CAAGCCGTCGCTCGAGTCGTCGCCGCACGGTGCCGGGCG 7677
Query 54895 CCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCGACGACCTCGAAGCGCGTAT 54954
| || |||||| || ||| || | ||||||| |||||| ||| ||| ||
Sbjct 7678 GCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCACGCACGACGAGCTCCGGGCGGCCAT 7737
Query 54955 GACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCATACAA 55014
| ||||||||||||||| | ||| |||| |||||||||| || | || |||||
Sbjct 7738 GGTCGGCATCGAGTACCGCGACACCGACGCGTTCCTCGACGAGATCCCGGCGGCGTACAA 7797
Query 55015 GCCGATCGACGTCGTGATGCACGACGCCG-AGACGCTGGTGTCGGTGGATGCCGAGCTGC 55073
|||||||||| |||||| ||||||| ||| || |||||| | | |||||
Sbjct 7798 GCCGATCGACCAGGTGATGGCGGACGCCGCCGAC-CTCGTGTCGATCCGGCACACGCTGC 7856
Query 55074 GGCAGCTCTTGAACGTCAAGGG 55095
||||| || | ||||| |||||
Sbjct 7857 GGCAGATCGTCAACGTGAAGGG 7878
>seq63378
Length=15302
Score = 149 bits (164), Expect = 2e-31
Identities = 261/380 (69%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 12590 ATCATGGACAACGCCCTGGCCGCGGTTGATAAGACGGCGTTCGGGCTCGACGAGGCCGCC 12649
|||||||||| ||||||| | || ||| || ||||| |||| ||| || ||
Sbjct 11661 ATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCAGCT 11720
Query 12650 ACCACAGCGGCGTCCGCGGTGGCCGCCGGTATCGAGCCGGGCGAGCGGCTGACCGGCTAC 12709
| || || ||| || |||||||||||| |||| ||| || ||| || |||
Sbjct 11721 GGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAGTAC 11780
Query 12710 CTGAAAAGCGTCGCCGACACCGCGGCTATCGCGGGCACGTCAATGGCCGACATGGGCGCA 12769
|| || | ||||||| | || | ||||| || || | | ||| |||||| |
Sbjct 11781 CTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGCTCG 11840
Query 12770 ATCTTCAACAAGGTGCAGACCTCCGGCAAGGCGTTCACTGGCGATCTCAACATGCTTTCT 12829
||| |||||||| | ||| |||||||| | ||| | | | |||||| ||| ||
Sbjct 11841 ATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTCGCT 11900
Query 12830 GACCGTGGCCTGCCGATATTCACTTGGTTGCAAGAGGAATACGGCGTAACCGGCGAGGCG 12889
||||| ||| | ||||| ||| ||| |||| |||| |||||||| ||| ||| |
Sbjct 11901 GACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGACAAG 11960
Query 12890 CTCTCGAAGATGGTCAGCGAGGGCAAGGTCGACGCCGCGACATTCCAGAAGGTTGTTGCC 12949
|||||| ||||||| |||||||||||||| | || || |||| ||||| | |
Sbjct 11961 CTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCATCGAG 12020
Query 12950 GAGCGCATCGGCGGCGCCGC 12969
||| |||||||||||| ||
Sbjct 12021 GAGAACATCGGCGGCGCGGC 12040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190684531518912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |