Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_024147.1 Length=57315 Score E Sequences producing significant alignments: (Bits) Value seq63378 163 1e-35 >seq63378 Length=15302 Score = 163 bits (180), Expect = 1e-35 Identities = 215/298 (72%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 10606 CCGCCGGTATCAAGCCGGGCGAGGATCTGACCAAGTATCTGTCGCTGACCGCTGACACGG 10665 |||||||||||||||| ||| ||| || || ||||| || ||| ||||| ||| ||| Sbjct 11743 CCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAGTACCTCAAGCTCACCGCCGACGCGG 11802 Query 10666 CCGCGATCGCGGGCACCTCGCTGGCCGACATGGGCGGAATCTTCAACAAGATTCAGTCGT 10725 || | ||||| || |||||| | ||| |||||| ||| ||||||||| | Sbjct 11803 CCACCATCGCTGGTGTCTCGCTCGACGAGATGGGCTCGATCATCAACAAGACGACCACCA 11862 Query 10726 CGGGCAAGGCGTACACGCTTGAGCTTCGCCAGCTCGCCAACCAAGGTCTGCCGATCTTCC 10785 ||||||| |||||| | || ||||||||| ||| || | |||||||||| Sbjct 11863 GCGGCAAGGTCTACACGGACAACCTCAACCAGCTCGCTGACCGGGGCATCCCGATCTTCC 11922 Query 10786 AATGGCTGCAGGACGAGTACAAGGTCAGCGCCGACGAGCTGAACAAGATGGTGTCGGACG 10845 | ||||||||| | |||||| ||| ||||||| |||| |||||| ||| | | Sbjct 11923 AGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGACAAGCTCTCGTCGATGGTCTCGCAGG 11982 Query 10846 GCGCGGTCGACTCTGAGACTTTCCGCCGGGTGATCGAGAAGAATATCGGCGGCGCCGC 10903 || ||||||||| | || |||||| ||| |||||| |||| ||||||||||| || Sbjct 11983 GCAAGGTCGACTCGGCCACCTTCCGCAAGGTCATCGAGGAGAACATCGGCGGCGCGGC 12040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183147833648736