Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_024366.1
Length=62661
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 293 9e-75
seq63378 143 1e-29
seq63415 98.7 4e-16
>seq63210
Length=11074
Score = 293 bits (324), Expect = 9e-75
Identities = 542/780 (69%), Gaps = 45/780 (6%)
Strand=Plus/Plus
Query 53816 GTGGCGCGAACAACTCGGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGA 53875
|||||| | || ||||| || ||||| ||||||||||||||||| | | | ||||
Sbjct 7135 GTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGA 7194
Query 53876 CCAGCACGGCCGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGAT 53935
| |||| | || | | |||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 7195 CGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGAT 7254
Query 53936 CGCCCAGAAGCACATCAAGATCGCGCAAGCCGAATGCG-CCGAGC-ATGGTG--TCGAAC 53991
||||||| |||||||| ||||||| | ||| ||| |||| ||||| |||| |
Sbjct 7255 CGCCCAGCGGCACATCACGATCGCGAA----GAAGGCGATGGAGCGGTGGTGGATCGAGC 7310
Query 53992 TGCCCGGCGGCAACAAGGATCTAGCCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGT 54051
|||| | || || || || ||||||||||||||| || ||||| | ||
Sbjct 7311 TGCCGG------ACCCCGACCTGGCGTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGT 7364
Query 54052 ACCTCGCTGAGCTGCGTTGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGATGG 54111
|| |||| |||||||| |||||||| || |||||| | |||||||| | ||||||||||
Sbjct 7365 ACATCGCCGAGCTGCGGTGGGCGCAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGG 7424
Query 54112 ACCGGTACCGGCAAGCGTTCGCGCACTGGCTCGACATCGGTGTCGACGAGGCGCCAGTCG 54171
||||| ||| || ||| || ||| ||| || ||||| ||||
Sbjct 7425 ACCGG--------GTCGTCCG-GCAGCTGCGCGA------GGTCATGGACGCGCCCGTCG 7469
Query 54172 TCGAGATCGCCGGCGAACGCGTCAACGCGCACCACAACTACAC-CACCCAGGAGCACATC 54230
||| ||| ||||| ||||| |||||||||| ||| || | | | || |
Sbjct 7470 AGGAGCTCG--AGCGAA----TCAACTGCCACCACAACTTCACGCAGCGCGAGACGCA-C 7522
Query 54231 AACGGTGAGCTGGTGTGGGTGACCCGCAAGGGCGCCATCAGCGCGCAACTCGGTG-AGCG 54289
|| || ||||||||| |||| |||||||| ||| ||| || ||| | ||
Sbjct 7523 TGGGGGAAGTCCGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCG-AAGGCGGGGCAGGC 7581
Query 54290 TGGCCTCATCCCCGGCAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGCAAC-- 54347
||||| |||||||| |||||||| || || ||||||||| || ||||||
Sbjct 7582 CGGCCTGATCCCCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAA 7641
Query 54348 CCCGAAGGGCTGCATTCCGCGCCGCACGGCGCCGGCCGCCGCTACTCCCGCACCAAGGCA 54407
||| ||| | || |||||||||| ||||| || | ||||| || | ||||
Sbjct 7642 GCCG--TCGCTCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCA 7699
Query 54408 CGCAAGCTGTTCACCGTCGACGACCTCGCAGACCG-TATGCGCGGCATCGAATACCGGCA 54466
|| | |||||| |||||| ||| | | | | ||| ||||||||| ||||| |
Sbjct 7700 CGGCGGACGTTCACGCACGACGAGCTC-CGGGCGGCCATGGTCGGCATCGAGTACCGCGA 7758
Query 54467 CGGTGAGGCGTGGGTCGACGAGATTCCCGACGCCTACAAGCCGATTGACGTTGTCATGCA 54526
| || |||| |||||||||| || | || ||||||||||| ||| || |||
Sbjct 7759 CACCGACGCGTTCCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGC 7818
Query 54527 CGACGCCGAAGACCTCGTGTCGGTTGACGTCGAGCTGCGTCAAATCGTCAACGTCAAGGG 54586
||||||| |||||||||||| | | |||||| || ||||||||||| |||||
Sbjct 7819 GGACGCCGCCGACCTCGTGTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 7878
>seq63378
Length=15302
Score = 143 bits (158), Expect = 1e-29
Identities = 278/409 (68%), Gaps = 6/409 (1%)
Strand=Plus/Plus
Query 12602 ATCGACGACGCGAAGTTCAAGCTGCAGGGTCTCGGCAACACTGCGGAGCAGG---TGCAG 12658
||||||||||||||| |||||| || ||| || || || | ||| | |
Sbjct 11601 ATCGACGACGCGAAGGGCAAGCTCGCCGGCCTC---AAGACGTCGACGAAGGACATCGCG 11657
Query 12659 TCCATCATGGACAACGCGCTGGCTGCGGTGAAGGGCACGGCGTTCGGGCTCGACGAGGCC 12718
|| |||||||||| ||| ||| | || || || || ||||| |||| ||| ||
Sbjct 11658 TCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCA 11717
Query 12719 GCGACAACGGCAGCGTCCGCGGTGGCCGCCGGAATCAAGCCCGGGCAGCAGTTGACCGAC 12778
|| ||| || ||| || |||||||| ||||||||||| ||| | | || |
Sbjct 11718 GCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAG 11777
Query 12779 TATCTGAAGCTCGTCGGCGACACTGCGGCGATCGCCGGCACGTCGCTGGCTGACATGGGC 12838
|| || |||||| || |||| | || | ||||| || ||||| | || ||||||
Sbjct 11778 TACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGC 11837
Query 12839 GCGATCTTCAACCGGGTGCAGACGTCGGGCAAGGCGTTCACGGGTGACCTGAACCAGCTC 12898
||||| ||||| | | || ||||||| | ||||| |||| |||||||||
Sbjct 11838 TCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTC 11897
Query 12899 GCCGACCGCGGTTTGCCTGTATTCCAATGGCTGCAAGAGGAATACGACGTCAGCGGCGCG 12958
|| ||||| || | || | ||||| |||||||| |||| |||| |||| || ||
Sbjct 11898 GCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGAC 11957
Query 12959 AAGCTGTCGAAGATGGTCGAGAAGGGCAAGATTGACGCCGCGACGTTCC 13007
||||| ||| ||||||| | |||||||| | ||| | || || ||||
Sbjct 11958 AAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCC 12006
>seq63415
Length=16791
Score = 98.7 bits (108), Expect = 4e-16
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 827 GGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 5444 GGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 200234916086688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |