Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq63210 293 9e-75 seq63378 143 1e-29 seq63415 98.7 4e-16 >seq63210 Length=11074 Score = 293 bits (324), Expect = 9e-75 Identities = 542/780 (69%), Gaps = 45/780 (6%) Strand=Plus/Plus Query 53816 GTGGCGCGAACAACTCGGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGA 53875 |||||| | || ||||| || ||||| ||||||||||||||||| | | | |||| Sbjct 7135 GTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGA 7194 Query 53876 CCAGCACGGCCGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGAT 53935 | |||| | || | | |||||||||||||| ||||| |||||||| |||||||||||||| Sbjct 7195 CGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGAT 7254 Query 53936 CGCCCAGAAGCACATCAAGATCGCGCAAGCCGAATGCG-CCGAGC-ATGGTG--TCGAAC 53991 ||||||| |||||||| ||||||| | ||| ||| |||| ||||| |||| | Sbjct 7255 CGCCCAGCGGCACATCACGATCGCGAA----GAAGGCGATGGAGCGGTGGTGGATCGAGC 7310 Query 53992 TGCCCGGCGGCAACAAGGATCTAGCCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGT 54051 |||| | || || || || ||||||||||||||| || ||||| | || Sbjct 7311 TGCCGG------ACCCCGACCTGGCGTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGT 7364 Query 54052 ACCTCGCTGAGCTGCGTTGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGATGG 54111 || |||| |||||||| |||||||| || |||||| | |||||||| | |||||||||| Sbjct 7365 ACATCGCCGAGCTGCGGTGGGCGCAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGG 7424 Query 54112 ACCGGTACCGGCAAGCGTTCGCGCACTGGCTCGACATCGGTGTCGACGAGGCGCCAGTCG 54171 ||||| ||| || ||| || ||| ||| || ||||| |||| Sbjct 7425 ACCGG--------GTCGTCCG-GCAGCTGCGCGA------GGTCATGGACGCGCCCGTCG 7469 Query 54172 TCGAGATCGCCGGCGAACGCGTCAACGCGCACCACAACTACAC-CACCCAGGAGCACATC 54230 ||| ||| ||||| ||||| |||||||||| ||| || | | | || | Sbjct 7470 AGGAGCTCG--AGCGAA----TCAACTGCCACCACAACTTCACGCAGCGCGAGACGCA-C 7522 Query 54231 AACGGTGAGCTGGTGTGGGTGACCCGCAAGGGCGCCATCAGCGCGCAACTCGGTG-AGCG 54289 || || ||||||||| |||| |||||||| ||| ||| || ||| | || Sbjct 7523 TGGGGGAAGTCCGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCG-AAGGCGGGGCAGGC 7581 Query 54290 TGGCCTCATCCCCGGCAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGCAAC-- 54347 ||||| |||||||| |||||||| || || ||||||||| || |||||| Sbjct 7582 CGGCCTGATCCCCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAA 7641 Query 54348 CCCGAAGGGCTGCATTCCGCGCCGCACGGCGCCGGCCGCCGCTACTCCCGCACCAAGGCA 54407 ||| ||| | || |||||||||| ||||| || | ||||| || | |||| Sbjct 7642 GCCG--TCGCTCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCA 7699 Query 54408 CGCAAGCTGTTCACCGTCGACGACCTCGCAGACCG-TATGCGCGGCATCGAATACCGGCA 54466 || | |||||| |||||| ||| | | | | ||| ||||||||| ||||| | Sbjct 7700 CGGCGGACGTTCACGCACGACGAGCTC-CGGGCGGCCATGGTCGGCATCGAGTACCGCGA 7758 Query 54467 CGGTGAGGCGTGGGTCGACGAGATTCCCGACGCCTACAAGCCGATTGACGTTGTCATGCA 54526 | || |||| |||||||||| || | || ||||||||||| ||| || ||| Sbjct 7759 CACCGACGCGTTCCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGC 7818 Query 54527 CGACGCCGAAGACCTCGTGTCGGTTGACGTCGAGCTGCGTCAAATCGTCAACGTCAAGGG 54586 ||||||| |||||||||||| | | |||||| || ||||||||||| ||||| Sbjct 7819 GGACGCCGCCGACCTCGTGTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 7878 >seq63378 Length=15302 Score = 143 bits (158), Expect = 1e-29 Identities = 278/409 (68%), Gaps = 6/409 (1%) Strand=Plus/Plus Query 12602 ATCGACGACGCGAAGTTCAAGCTGCAGGGTCTCGGCAACACTGCGGAGCAGG---TGCAG 12658 ||||||||||||||| |||||| || ||| || || || | ||| | | Sbjct 11601 ATCGACGACGCGAAGGGCAAGCTCGCCGGCCTC---AAGACGTCGACGAAGGACATCGCG 11657 Query 12659 TCCATCATGGACAACGCGCTGGCTGCGGTGAAGGGCACGGCGTTCGGGCTCGACGAGGCC 12718 || |||||||||| ||| ||| | || || || || ||||| |||| ||| || Sbjct 11658 TCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCA 11717 Query 12719 GCGACAACGGCAGCGTCCGCGGTGGCCGCCGGAATCAAGCCCGGGCAGCAGTTGACCGAC 12778 || ||| || ||| || |||||||| ||||||||||| ||| | | || | Sbjct 11718 GCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAG 11777 Query 12779 TATCTGAAGCTCGTCGGCGACACTGCGGCGATCGCCGGCACGTCGCTGGCTGACATGGGC 12838 || || |||||| || |||| | || | ||||| || ||||| | || |||||| Sbjct 11778 TACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGC 11837 Query 12839 GCGATCTTCAACCGGGTGCAGACGTCGGGCAAGGCGTTCACGGGTGACCTGAACCAGCTC 12898 ||||| ||||| | | || ||||||| | ||||| |||| ||||||||| Sbjct 11838 TCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTC 11897 Query 12899 GCCGACCGCGGTTTGCCTGTATTCCAATGGCTGCAAGAGGAATACGACGTCAGCGGCGCG 12958 || ||||| || | || | ||||| |||||||| |||| |||| |||| || || Sbjct 11898 GCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGAC 11957 Query 12959 AAGCTGTCGAAGATGGTCGAGAAGGGCAAGATTGACGCCGCGACGTTCC 13007 ||||| ||| ||||||| | |||||||| | ||| | || || |||| Sbjct 11958 AAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCC 12006 >seq63415 Length=16791 Score = 98.7 bits (108), Expect = 4e-16 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 827 GGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 5444 GGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200234916086688