Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq24164 95.1 1e-14 seq32996 89.7 5e-13 seq51266 86.0 6e-12 >seq24164 Length=196930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 |||| ||||||||||| || ||| | ||||| |||||||||||| || |||| || Sbjct 29744 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 29686 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || | ||||| || || || || || ||||| || || ||| || ||| | | Sbjct 29685 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 29626 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | ||| ||| ||| || ||||||| ||| | ||| || || || |||||||| | | Sbjct 29625 TCAATAGTGTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 29566 Query 132113 AAAATCTGCAT 132123 || |||||||| Sbjct 29565 AAGATCTGCAT 29555 >seq32996 Length=3898 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || || |||||||| | ||| || ||| || ||||| ||||| | | Sbjct 297 GACTCTTTCTGGATATTGTAGTCTGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCA 356 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | |||||||||||| || || ||||| || || || ||| ||||| Sbjct 357 AAGATAAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACA 416 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||| || | || | || || ||||||||||| || Sbjct 417 TTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTC 476 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 477 ACAAAGATCTGCAT 490 >seq51266 Length=1200 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| | || |||||||| | | ||| || ||| || ||||| ||||| | | Sbjct 349 GACTCTTTGCGGATATTGTAGTCTGTAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCA 408 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | |||||||||||| || || ||| ||| | || || ||| ||||| Sbjct 409 AAGATGAGCCTCTGTTGATCTGGTGGAATCCCTCCTTGTCCTGT-ATCTTTGCTTTCACA 467 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||| || | || | || || ||||||||||| || Sbjct 468 TTGTCAATAGTATCAGAGCTCTCCACCTCCATTGTGATTGTCTTCCCAGTCAGAGTCTTC 527 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 528 ACAAAGATCTGCAT 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476231912807040