Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq16715 89.7 5e-13 >seq16715 Length=90750 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || || | || || | || || ||| | | Sbjct 65779 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 65720 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || ||| ||| || ||||||||||| || || |||||| Sbjct 65719 GACACCATTGACAACGTTAAGGCAAAGATTCAGGACAAAGAGGGTATCCCACCAGATCAG 65660 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| | ||||| || | ||||||| || | | |||||||||| Sbjct 65659 CAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAAT 65600 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || ||||| ||| ||||| | ||||| || | || ||||| Sbjct 65599 ATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 65553 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || || || | || || |||| || ||| | Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCTCT 54280 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| || |||||||| || || || || ||| Sbjct 54279 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 54220 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| | || || || | ||||||| || | | |||||||||| Sbjct 54219 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 54160 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || ||||| ||| ||||| | ||||| || | || ||||| Sbjct 54159 ATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 54113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444740193876480