Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq16715 95.1 1e-14
seq25243 86.0 5e-12
>seq16715
Length=90750
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
|||||||| || || || || |||||||||||||| |||||| | || ||| | |
Sbjct 65779 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 65720
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | ||| | | || || ||| ||| |||||||| || | || |||||
Sbjct 65719 GACACCATTGACAACGTTAAGGCAAAGATTCAGGACAAAGAGGGTATCCCACCAGATCAG 65660
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|||||| | |||| ||| ||||| || || |||||| | || | | |||||||||
Sbjct 65659 CAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAAT 65600
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|| || || ||||| || || ||| | || |||||| | | |||||
Sbjct 65599 ATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 65553
>seq25243
Length=7086
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412
|| ||||||||| | || |||||| || || || |||| ||| || |||||||| |||
Sbjct 5270 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGAA 5329
Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472
||| | ||| ||| ||||||||||| || |||||||| || || ||| | || ||
Sbjct 5330 GATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCTTGTTCTG 5389
Query 106473 AGGTTACGAGGAGGA 106487
||| | | ||||||
Sbjct 5390 AGGCTCAGGGGAGGA 5404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402017430451712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |