Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq63531 98.7 1e-15 >seq63531 Length=42858 Score = 98.7 bits (108), Expect = 1e-15 Identities = 191/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 176388 AGCTGTTCCTTCACCTGATCGAAGTGATTGTTATAGATGTGGGTATCACCAAGGTTGCCG 176447 ||||| |||| ||||| |||| ||| |||| |||| |||| || ||| | | | Sbjct 31833 AGCTGCTCCTCGACCTGCTCGACGTGGTTGTCGTAGACGTGGCAGTCGCCACCGGTCCAC 31892 Query 176448 ATCAGTTCCCCGACTTCCAAGCCGCATTCCAGCGCGATCAGATGTGTCAGGAGTGCGTAA 176507 | | || ||||| || | ||| | | |||||||| || ||||| || ||||| Sbjct 31893 ACGAAGTCGCCGACCTCGAGCCCGGTCTGCGCCGCGATCATGTGGGTCAGCAGCGCGTAC 31952 Query 176508 GAGGCGATGTTGAATGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAG 176567 |||||||||||||| || | || | ||| | |||| || |||||| | | |||| Sbjct 31953 GAGGCGATGTTGAACGGGACACCGAGGAACATGTCCGCGCTCCGCTGGTACAGCTGGCAC 32012 Query 176568 GACAGTTTCCCGTTGCGGACATAGAACTGGAA-ACCGTAGTGACACGGCGGCAAAGCCAT 176626 || || || |||| | ||| | ||||||||| | || ||| ||||| | || ||||| Sbjct 32013 GAGAGCTTGCCGTCGTTGACGTGGAACTGGAAGAACG-CGTGGCACGGGGCCAGCGCCAT 32071 Query 176627 -TAGATCGACCGCCCCGACATTCCAAGCCGAGACCAT 176662 | | | ||| | |||| ||||| |||||||| || Sbjct 32072 CTCGGGC-ACCTCGGCGACGTTCCACGCCGAGACGAT 32107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622419484083840