Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq6171 145 1e-29
seq12363 113 6e-20
seq11918 107 3e-18
>seq6171
Length=36435
Score = 145 bits (160), Expect = 1e-29
Identities = 571/891 (64%), Gaps = 14/891 (2%)
Strand=Plus/Minus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| || || || ||||| | ||||| || |||||||| || |||| | ||
Sbjct 5256 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAGC 5197
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
||||| ||||||| ||||| ||||| || | || | | | || || | | |
Sbjct 5196 TCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAAC 5137
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
|||||||| || ||||||||||||||| | |||||| || | |||||| || | ||
Sbjct 5136 AATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAGA 5077
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
| || ||||| || | ||||| |||| || || || || |||| || ||
Sbjct 5076 GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAATT 5017
Query 39566 GATGTTACTACCTCATCA-----CTCGGTGGAT-GCAATAAATGTTTAAACATTAAGCAG 39619
| ||| ||| ||| || || | |||| | ||| || || | ||
Sbjct 5016 CCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAA--ACTGTA-AAGCA---AACAC 4963
Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679
|| || ||||| || | || || ||||| |||||| || || || || || | ||||
Sbjct 4962 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 4903
Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAA-AAGAAGAT 39738
||||||| || || ||||| | ||||||||| | | || ||| | | | ||||| ||
Sbjct 4902 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAA-CAGAAGCTTCCGCTGAAGAAAAT 4844
Query 39739 GCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCA 39798
||||| || ||||| || || | | ||| || || || | || |||||
Sbjct 4843 CCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAACCATCGATCCA 4784
Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858
| ||||| | || ||||| | |||||||| || || || || ||| || |
Sbjct 4783 ACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACAA 4724
Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918
| ||||| ||| ||| || | || | || | | || ||| ||||| || ||
Sbjct 4723 TTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGA 4664
Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978
|||||| || ||||| || || || || || || ||| | || |||| || || ||
Sbjct 4663 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGAC 4604
Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038
||| || ||| | || | || || || || || || |||||||||||
Sbjct 4603 GTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 4544
Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098
|| | ||||| | || |||| | ||||| ||| ||| | || | ||||| | |
Sbjct 4543 GGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACGATT 4484
Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158
||| |||| ||| |||||||| | ||||| || || ||| || || ||||||||
Sbjct 4483 ATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 4424
Query 40159 GTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209
| ||| || | |||| || ||||| || ||| |||| || ||| ||
Sbjct 4423 TTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTT 4373
>seq12363
Length=97601
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | |||| ||||||| |||| | || | ||||| |||||||| |||
Sbjct 63655 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATTGGAATAATTCCA 63596
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||||||| ||||||||| || | | |||||||| | ||||
Sbjct 63595 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 63536
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || |||||||| || ||| || | |||||| || | |||||||||||
Sbjct 63535 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 63476
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
|| || || ||||| ||| ||||| | || || ||||||
Sbjct 63475 CCTTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 63434
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||||| | || ||||| || |||||||||||| | | ||| | || ||
Sbjct 63334 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 63275
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|| || | || || || || ||||| || ||| || || | | ||| | |||||
Sbjct 63274 ATAAGTCTTGATGGCAGAGTCGATATCATTCTTATGTATCCCAACAGAGACTCTCATCAG 63215
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
|||||| || || | |||||| ||| || || || || ||||| || |||||
Sbjct 63214 CATATGTTGTGGCCTTTCTACAACTTTTCCATCAATCTTTAAGAGGTAAGACCGCTCCAG 63155
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || ||||| || | || |||||| || || || || ||
Sbjct 63154 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 63107
>seq11918
Length=25867
Score = 107 bits (118), Expect = 3e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|| || ||||| | ||||||||||| | |||| | || | |||||| |||| ||| |||
Sbjct 16174 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 16233
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | || ||||||||| ||||||||| || | || || || || | ||||
Sbjct 16234 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAT 16293
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || ||||| || || ||| || | |||||| || | || ||||||||
Sbjct 16294 ACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTATCATATATG 16353
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| || ||||||||| ||||| | || || ||||||
Sbjct 16354 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 16395
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || |||||||| | ||| |||||||| ||||||||||| || ||| | || ||
Sbjct 16597 AGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 16656
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||||| | || | ||||| |||||| | || ||||| | | || | |||||
Sbjct 16657 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 16716
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || || || | |||||| | || | || || || ||||| || |||| ||
Sbjct 16717 CATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATCTTTAAGAGGTAAGACCTTTCAAG 16776
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || ||||| || | || ||||||||| ||||| |||||
Sbjct 16777 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATAAT 16824
Score = 89.7 bits (98), Expect = 7e-13
Identities = 127/174 (73%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548
|||||||||||||| ||| |||||| || || || || ||||| ||| |||||||
Sbjct 15659 CTCTTTTTCATATTTTGTGTATAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 15718
Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606
|||| ||| |||||| | ||| ||||| || ||| | ||| |||| || ||||
Sbjct 15719 AGGAGCCTCACATGGACAAAACAAAGACCATACCCCAT--TGCTTTGGACTCTTTGCATA 15776
Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659
|| ||||| || | ||||||||| ||| || ||||| | | | ||| |||||
Sbjct 15777 AAAAGATCTGGTACCCAAAGAGC-ATAGAAAAGATCCCGTGCCCGATTCTCTTC 15829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686362157976960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |