Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6171 145 1e-29 seq12363 113 6e-20 seq11918 107 3e-18 >seq6171 Length=36435 Score = 145 bits (160), Expect = 1e-29 Identities = 571/891 (64%), Gaps = 14/891 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || ||||| | ||||| || |||||||| || |||| | || Sbjct 5256 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAGC 5197 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||| ||||| ||||| || | || | | | || || | | | Sbjct 5196 TCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAAC 5137 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| || ||||||||||||||| | |||||| || | |||||| || | || Sbjct 5136 AATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAGA 5077 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | || ||||| || | ||||| |||| || || || || |||| || || Sbjct 5076 GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAATT 5017 Query 39566 GATGTTACTACCTCATCA-----CTCGGTGGAT-GCAATAAATGTTTAAACATTAAGCAG 39619 | ||| ||| ||| || || | |||| | ||| || || | || Sbjct 5016 CCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAA--ACTGTA-AAGCA---AACAC 4963 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || || ||||| || | || || ||||| |||||| || || || || || | |||| Sbjct 4962 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 4903 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAA-AAGAAGAT 39738 ||||||| || || ||||| | ||||||||| | | || ||| | | | ||||| || Sbjct 4902 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAA-CAGAAGCTTCCGCTGAAGAAAAT 4844 Query 39739 GCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCA 39798 ||||| || ||||| || || | | ||| || || || | || ||||| Sbjct 4843 CCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAACCATCGATCCA 4784 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | ||||| | || ||||| | |||||||| || || || || ||| || | Sbjct 4783 ACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACAA 4724 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 | ||||| ||| ||| || | || | || | | || ||| ||||| || || Sbjct 4723 TTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGA 4664 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 |||||| || ||||| || || || || || || ||| | || |||| || || || Sbjct 4663 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGAC 4604 Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 ||| || ||| | || | || || || || || || ||||||||||| Sbjct 4603 GTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 4544 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098 || | ||||| | || |||| | ||||| ||| ||| | || | ||||| | | Sbjct 4543 GGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACGATT 4484 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 ||| |||| ||| |||||||| | ||||| || || ||| || || |||||||| Sbjct 4483 ATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 4424 Query 40159 GTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 | ||| || | |||| || ||||| || ||| |||| || ||| || Sbjct 4423 TTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTT 4373 >seq12363 Length=97601 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | ||||| |||||||| ||| Sbjct 63655 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATTGGAATAATTCCA 63596 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||||||||| || | | |||||||| | |||| Sbjct 63595 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 63536 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 63535 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 63476 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || || ||||| ||| ||||| | || || |||||| Sbjct 63475 CCTTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 63434 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | || ||||| || |||||||||||| | | ||| | || || Sbjct 63334 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 63275 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || || || ||||| || ||| || || | | ||| | ||||| Sbjct 63274 ATAAGTCTTGATGGCAGAGTCGATATCATTCTTATGTATCCCAACAGAGACTCTCATCAG 63215 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | |||||| ||| || || || || ||||| || ||||| Sbjct 63214 CATATGTTGTGGCCTTTCTACAACTTTTCCATCAATCTTTAAGAGGTAAGACCGCTCCAG 63155 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 63154 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 63107 >seq11918 Length=25867 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | ||||||||||| | |||| | || | |||||| |||| ||| ||| Sbjct 16174 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 16233 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| ||||||||| || | || || || || | |||| Sbjct 16234 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAT 16293 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||| || || ||| || | |||||| || | || |||||||| Sbjct 16294 ACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTATCATATATG 16353 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||||||| ||||| | || || |||||| Sbjct 16354 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 16395 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || |||||||| | ||| |||||||| ||||||||||| || ||| | || || Sbjct 16597 AGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 16656 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| | || | ||||| |||||| | || ||||| | | || | ||||| Sbjct 16657 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 16716 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| | || | || || || ||||| || |||| || Sbjct 16717 CATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATCTTTAAGAGGTAAGACCTTTCAAG 16776 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| ||||| ||||| Sbjct 16777 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATAAT 16824 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/174 (73%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||||||||||||| ||| |||||| || || || || ||||| ||| ||||||| Sbjct 15659 CTCTTTTTCATATTTTGTGTATAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 15718 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606 |||| ||| |||||| | ||| ||||| || ||| | ||| |||| || |||| Sbjct 15719 AGGAGCCTCACATGGACAAAACAAAGACCATACCCCAT--TGCTTTGGACTCTTTGCATA 15776 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659 || ||||| || | ||||||||| ||| || ||||| | | | ||| ||||| Sbjct 15777 AAAAGATCTGGTACCCAAAGAGC-ATAGAAAAGATCCCGTGCCCGATTCTCTTC 15829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686362157976960