Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq63531 107 9e-19 >seq63531 Length=42858 Score = 107 bits (118), Expect = 9e-19 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 21564 CTGGCTACAGCAAAAGGGCTGCCACATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCT 21623 |||||| ||| | | ||| || ||||||| |||| ||||| | || |||| ||| Sbjct 32282 CTGGCTGCAGGAGCACGGCGTCCGCATCTGGAACGAGTGGGCGGACGAGGACGGCGACCT 32223 Query 21624 CGGCCCGATCTATGGTGCCCAGTGGCGCAGCATCCAAGGCCCCGATGGAA-AGAACATCG 21682 ||||||| | || || | |||||||| | | | ||||| || || |||||| Sbjct 32222 CGGCCCGGTGTACGGCGTGCAGTGGCGTT-CGTGGCCGACCCCGTCGGGCGAGCACATCG 32164 Query 21683 ACCAGCTGGCCAAGGCACAAGAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCATCG 21742 ||||| | ||| ||| |||| | | | || | |||||||| |||||| |||||| Sbjct 32163 ACCAGATCGCCCAGGTCATCGAGCAGATCCGGACCAACCCGGACTCCCGCCGGCTCATCG 32104 Query 21743 TGAATGCCTGGAACGTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGATGT 21802 | || |||||||| |||||| | | ||||||| ||| | |||||||| ||| | | Sbjct 32103 TCTCGGCGTGGAACGTCGCCGAGGTGCCCGAGATGGCGCTGGCCCCGTGCCACGCGTTCT 32044 Query 21803 TCCAGTTC 21810 |||||||| Sbjct 32043 TCCAGTTC 32036 Score = 100 bits (110), Expect = 1e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 21955 TGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAGC 22014 ||| | || || ||||| ||||| ||||||||||| || || || |||||||||||| Sbjct 32011 TGCCAGCTGTACCAGCGGAGCGCGGACATGTTCCTCGGTGTCCCGTTCAACATCGCCTCG 31952 Query 22015 TACGCGCTGCTGACGCACCTCATGGCGGCCACGGTCGGCATGCAGGCCGAGAAGTTCATC 22074 |||||||||||||| ||| | || ||||| | ||| | ||| || | ||| | Sbjct 31951 TACGCGCTGCTGACCCACATGATCGCGGCGCAGACCGGGCTCGAGGTCGGCGACTTCGTG 31892 Query 22075 TGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCCAAGCAGC 22129 ||| | || || ||||||||| | ||| |||||| | || |||| | || ||| Sbjct 31891 TGGACCGGTGGCGACTGCCACGTCTACGACAACCACGTCGAGCAGGTCGAGGAGC 31837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236459587357904