Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_027348.1
Length=73990
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 107 9e-19
>seq63531
Length=42858
Score = 107 bits (118), Expect = 9e-19
Identities = 174/248 (70%), Gaps = 2/248 (1%)
Strand=Plus/Minus
Query 21564 CTGGCTACAGCAAAAGGGCTGCCACATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCT 21623
|||||| ||| | | ||| || ||||||| |||| ||||| | || |||| |||
Sbjct 32282 CTGGCTGCAGGAGCACGGCGTCCGCATCTGGAACGAGTGGGCGGACGAGGACGGCGACCT 32223
Query 21624 CGGCCCGATCTATGGTGCCCAGTGGCGCAGCATCCAAGGCCCCGATGGAA-AGAACATCG 21682
||||||| | || || | |||||||| | | | ||||| || || ||||||
Sbjct 32222 CGGCCCGGTGTACGGCGTGCAGTGGCGTT-CGTGGCCGACCCCGTCGGGCGAGCACATCG 32164
Query 21683 ACCAGCTGGCCAAGGCACAAGAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCATCG 21742
||||| | ||| ||| |||| | | | || | |||||||| |||||| ||||||
Sbjct 32163 ACCAGATCGCCCAGGTCATCGAGCAGATCCGGACCAACCCGGACTCCCGCCGGCTCATCG 32104
Query 21743 TGAATGCCTGGAACGTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGATGT 21802
| || |||||||| |||||| | | ||||||| ||| | |||||||| ||| | |
Sbjct 32103 TCTCGGCGTGGAACGTCGCCGAGGTGCCCGAGATGGCGCTGGCCCCGTGCCACGCGTTCT 32044
Query 21803 TCCAGTTC 21810
||||||||
Sbjct 32043 TCCAGTTC 32036
Score = 100 bits (110), Expect = 1e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 21955 TGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAGC 22014
||| | || || ||||| ||||| ||||||||||| || || || ||||||||||||
Sbjct 32011 TGCCAGCTGTACCAGCGGAGCGCGGACATGTTCCTCGGTGTCCCGTTCAACATCGCCTCG 31952
Query 22015 TACGCGCTGCTGACGCACCTCATGGCGGCCACGGTCGGCATGCAGGCCGAGAAGTTCATC 22074
|||||||||||||| ||| | || ||||| | ||| | ||| || | ||| |
Sbjct 31951 TACGCGCTGCTGACCCACATGATCGCGGCGCAGACCGGGCTCGAGGTCGGCGACTTCGTG 31892
Query 22075 TGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCCAAGCAGC 22129
||| | || || ||||||||| | ||| |||||| | || |||| | || |||
Sbjct 31891 TGGACCGGTGGCGACTGCCACGTCTACGACAACCACGTCGAGCAGGTCGAGGAGC 31837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 236459587357904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |