Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq6171 145 6e-30
>seq6171
Length=36435
Score = 145 bits (160), Expect = 6e-30
Identities = 381/579 (66%), Gaps = 2/579 (0%)
Strand=Plus/Plus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| |||||||| |||| | || ||| |||||||||| ||||| ||| || || |
Sbjct 4392 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCT 4451
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTGCATTAAAACCA 43825
|||| | ||||||||| ||| | || || | | | || ||| ||| | |
Sbjct 4452 GGACGGTAGAAGAAGTCGATCTATCTTCTGA-TAATCGTCACTGGGAAAACCTAACATCC 4510
Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885
|||| |||||| || || || | || |||||||| || ||||| || ||
Sbjct 4511 GGTGAAAGACATTTCATCACTCATGTGCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTT 4570
Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945
|| || | | | |||| | |||| || || | | || || || |||
Sbjct 4571 TTAGAGAACCTCGCAGGAAGGTTCATGAAAGACGTCCAGGTTGCTGAGGCGCGTGCTTTC 4630
Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005
|||||||| ||||| ||||| || ||||| ||||| || ||||||||| | ||| | ||
Sbjct 4631 TATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGAG 4690
Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065
||||||| || ||| |||| ||| |||||| ||| || || || | |||
Sbjct 4691 TCGTACATAAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATCGAGACCATCCCT 4750
Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125
|| || | || || | ||||||||| ||||| || || |||| |
Sbjct 4751 TGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGTTCCGAAACTTTCGCG 4810
Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCC 44185
|| || | || || ||||| ||| ||||| |||||||| ||| || |
Sbjct 4811 GAGCGCTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCG 4870
Query 44186 ATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATA 44245
||||||||||| || ||||| || || |||||||| || || || ||||||||||||||
Sbjct 4871 ATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATT 4930
Query 44246 AGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
| || ||||| || || || |||||||| || |||
Sbjct 4931 TCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTG 4969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397147611902320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |