Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6171 145 6e-30 >seq6171 Length=36435 Score = 145 bits (160), Expect = 6e-30 Identities = 381/579 (66%), Gaps = 2/579 (0%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| |||| | || ||| |||||||||| ||||| ||| || || | Sbjct 4392 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCT 4451 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTGCATTAAAACCA 43825 |||| | ||||||||| ||| | || || | | | || ||| ||| | | Sbjct 4452 GGACGGTAGAAGAAGTCGATCTATCTTCTGA-TAATCGTCACTGGGAAAACCTAACATCC 4510 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 |||| |||||| || || || | || |||||||| || ||||| || || Sbjct 4511 GGTGAAAGACATTTCATCACTCATGTGCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTT 4570 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || || | | | |||| | |||| || || | | || || || ||| Sbjct 4571 TTAGAGAACCTCGCAGGAAGGTTCATGAAAGACGTCCAGGTTGCTGAGGCGCGTGCTTTC 4630 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 |||||||| ||||| ||||| || ||||| ||||| || ||||||||| | ||| | || Sbjct 4631 TATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGAG 4690 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 ||||||| || ||| |||| ||| |||||| ||| || || || | ||| Sbjct 4691 TCGTACATAAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATCGAGACCATCCCT 4750 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 || || | || || | ||||||||| ||||| || || |||| | Sbjct 4751 TGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGTTCCGAAACTTTCGCG 4810 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCC 44185 || || | || || ||||| ||| ||||| |||||||| ||| || | Sbjct 4811 GAGCGCTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCG 4870 Query 44186 ATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATA 44245 ||||||||||| || ||||| || || |||||||| || || || |||||||||||||| Sbjct 4871 ATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATT 4930 Query 44246 AGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || ||||| || || || |||||||| || ||| Sbjct 4931 TCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTG 4969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397147611902320