Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq46021 93.3 4e-14 seq24164 89.7 4e-13 seq43689 86.0 5e-12 seq16715 84.2 2e-11 seq51266 82.4 6e-11 >seq46021 Length=44830 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| || || || || |||||||| ||| |||| || | || |||||||| ||||| Sbjct 38774 GTAGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTT-CGTCCATCCTCGAGCTGCTTACC 38716 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| |||| | |||||||| || || || | || || || || ||||| || Sbjct 38715 GGCGAAAATCAATCGCTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTT 38656 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||||| | || || |||| || |||| ||||||||||| || Sbjct 38655 AACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGT 38596 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 38595 CTTCACAAAGATCTGCAT 38578 >seq24164 Length=196930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 |||| ||||| ||||| || ||| || || | ||||||||||| || |||||| | Sbjct 29744 CTTTCTGAATGTTGTAATCAGCTAGAGTA-CGTCCATCTTCGAGCTGCTTTCCGGCGAAG 29686 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || | ||||| || ||||| || | ||| || || || ||||| ||| | | Sbjct 29685 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 29626 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | |||||| | | ||||||||| || || || | || ||||| ||||||||||| Sbjct 29625 TCAATAGTGTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 29566 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 29565 AAGATCTGCAT 29555 >seq43689 Length=21515 Score = 86.0 bits (94), Expect = 5e-12 Identities = 171/249 (69%), Gaps = 7/249 (3%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | |||||||| | ||||| || || || || ||||| || ||| Sbjct 1520 CCTCCACGTAGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 1461 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || || |||| || | ||| || |||||| | || || | || |||||||| || Sbjct 1460 AGAGTA-CGTCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGG 1402 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| ||||||| || | | | || | || || | ||| || Sbjct 1401 AATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATTGTATCAGAACTTTCCAC 1342 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 ||||| || |||| || || || ||||||||||||||||| ||||| |||| ||| Sbjct 1341 CTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT--CTGC---AAA 1287 Query 27260 TTTATTAAA 27268 || || ||| Sbjct 1286 TTCATAAAA 1278 >seq16715 Length=90750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||||||||| ||| | | || ||||||| Sbjct 66711 ACCAAGTGGAGAGTTGACTCCTTCTGAATATTGTAATCGGCTAGAGTACGGCCGTCTTCA 66770 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || || | ||| || ||||| || | || || || || | Sbjct 66771 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCCGGGGGTATGCCTTCCTTGTCCTGG 66830 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | | || | ||||||| | ||| || || || || |||| || Sbjct 66831 ATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGTCTTT 66890 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| |||||||| ||||| Sbjct 66891 CCAGTGAGGGTTTTGACAAAGATCTGCAT 66919 >seq51266 Length=1200 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| | ||||||||||| | | | |||| | || || ||||| ||||| Sbjct 346 GTAGACTCTTTGCGGATATTGTAGTCTGTAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 405 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||||||||| || || | ||||| || || ||||| |||| Sbjct 406 GCAAAGATGAGCCTCTGTTGATCTGGTGG-AATCCCTCCTTGTCCTGTATCTTTGCTTTC 464 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||| || | | || || || | || || | || || |||||||| Sbjct 465 ACATTGTCAATAGTATCAGAGCTCTCCACCTCCATTGTGATTGTCTTCCCAGTCAGAGTC 524 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 525 TTCACAAAGATCTGCAT 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424604691274368