Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq63299 107 2e-18
seq7277 104 3e-17
seq11918 93.3 5e-14
seq6171 89.7 6e-13
seq34693 82.4 1e-10
>seq63299
Length=13169
Score = 107 bits (118), Expect = 2e-18
Identities = 278/419 (66%), Gaps = 6/419 (1%)
Strand=Plus/Minus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
||||| ||||| | ||||| || ||||||| ||| | || ||||| | || ||
Sbjct 6908 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 6849
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
|||||||| || || | || ||| || | || ||||| || ||||||||| || | |
Sbjct 6848 CCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCT--CCTC 6791
Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660
| | |||| | | |||| || || |||||||| ||||||| || ||||| || |
Sbjct 6790 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAAG 6731
Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720
| |||||| ||| | | || ||||| || || | ||| || ||||||||||
Sbjct 6730 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCAACACCAACAA 6671
Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779
||||||| || || | || | | || | || || ||||| ||| | |||||| ||
Sbjct 6670 ACATCTCAACGAATTCTGAGCCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 6612
Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839
|| || || || | ||| || || ||||| || ||| | ||||| | |||
Sbjct 6611 ATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 6552
Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898
|| || || || | || | ||||||| |||| ||| | ||| || || | |||
Sbjct 6551 GGAATACGAGCGCCCACTGCAGTAAATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 6493
>seq7277
Length=17119
Score = 104 bits (114), Expect = 3e-17
Identities = 194/285 (68%), Gaps = 20/285 (7%)
Strand=Plus/Minus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| |||||||| || || | | |||||||| || || ||||||||||||||| |
Sbjct 14153 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 14098
Query 11600 ATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653
||||||| |||| | || | ||||| ||||||||||||||||| || |||
Sbjct 14097 --ACCACCAAGTCCTGCACCTCTCTGTCTTCCCACAGCATCAATCTCATCAATAAACACA 14040
Query 11654 ATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709
||||| || || |||| || | ||||| | ||| | ||| || || ||
Sbjct 14039 ATACAAGGCGCTTTAGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCC 13984
Query 11710 CACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGA 11769
|||||| ||||||| ||| ||||| | || || | || || ||||| ||| |
Sbjct 13983 CACACCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGC 13924
Query 11770 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
||||| || | |||| || | |||||||| || ||||||||
Sbjct 13923 CTCACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 13879
Score = 104 bits (114), Expect = 3e-17
Identities = 193/281 (69%), Gaps = 12/281 (4%)
Strand=Plus/Minus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| |||||||| || || | | |||||||| || || || |||||||||||| | |
Sbjct 15464 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA--C 15407
Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657
| | | || |||| | ||| | ||||| ||||||||||||||||| || || ||||
Sbjct 15406 CTCCAAGTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACTATAC 15347
Query 11658 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713
| || || |||| || | ||||| | ||| | ||| || || ||||||
Sbjct 15346 AAGGCGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACA 15291
Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773
|| ||||||| ||| ||||| | || || | || || ||||| ||| | ||||
Sbjct 15290 CCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGTACACCAGCTTCA 15231
Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
|| || | |||| || | |||||||| || ||||||||
Sbjct 15230 CCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 15190
>seq11918
Length=25867
Score = 93.3 bits (102), Expect = 5e-14
Identities = 157/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || ||||| || |||||||| ||||| ||||| | ||| ||| ||||| | |||
Sbjct 16586 TGAGGCCTTGGAGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 16645
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| | ||||||| | |||||| ||||| || || |||||| || | |
Sbjct 16646 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 16705
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119
|| | ||| | ||||| ||||| |||| | | | || | || | || | || ||
Sbjct 16706 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAATCTTTCCCT-GAATCTTTAAGAGGTA 16764
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164
| | ||||||||||||| |||||||||| || | ||| ||||
Sbjct 16765 AGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 16809
Score = 86.0 bits (94), Expect = 8e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280
||||| |||| || || ||||| || | |||||||||||| || ||| | ||||
Sbjct 15237 ACATATCTTGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTTGTG 15296
Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340
||||| | ||| |||||||| ||||| ||| ||| || || || | ||||| |||||
Sbjct 15297 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 15356
Query 111341 CTCTTCTTGTTGCACGCATCCT 111362
|| || | ||||| | |||||
Sbjct 15357 CTTTTTCTATTGCAAGAATCCT 15378
>seq6171
Length=36435
Score = 89.7 bits (98), Expect = 6e-13
Identities = 152/219 (69%), Gaps = 5/219 (2%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| | ||| || |||| ||||| | |||||||||||| || ||
Sbjct 4962 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 4903
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||| | ||||| || ||||||||| | || | ||||| ||| |||||| ||
Sbjct 4902 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 4843
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCG-AAGGAGCGAGACTTTGCATCAAA 122837
|| || ||||| ||||| || | | ||| || ||| ||| || || |||| |
Sbjct 4842 CCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAAC----CATCGAT 4787
Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876
||| | ||||||||||||||||| |||| ||| ||
Sbjct 4786 CCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGG 4748
>seq34693
Length=17230
Score = 82.4 bits (90), Expect = 1e-10
Identities = 195/295 (66%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511
|||||| | || || | ||| | || | |||||| || || | |||||| || ||
Sbjct 1959 ATCAAACCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 2018
Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571
||| || | | ||||| | | ||| |||||||| || || || | ||| || |
Sbjct 2019 AATGACAATGACTCCAGTGTTACCAGTAAAACCATCCATTTCAGTAAGAAGTTGGTTCAG 2078
Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGC 11631
||| || ||||| ||||||||| || | ||||| | | |||| | || || ||
Sbjct 2079 TGTCTGCTCTCTTTCATCATTTCCTCCTCCAATACCAGTTCCTCTTTGCCTCCCAACTGC 2138
Query 11632 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 11691
|||||| |||||||| || | || || || ||||| || | | || | ||
Sbjct 2139 ATCAATTTCATCAATAAAAATTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTC 2198
Query 11692 GCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746
| ||| || || |||||||||||||||||||| | || | || | |||||
Sbjct 2199 CCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAATGAACTCTGAGCCAGAG 2253
Score = 82.4 bits (90), Expect = 1e-10
Identities = 236/363 (65%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511
|||||| | || || | ||| | || | |||||| || || | |||||| || ||
Sbjct 2427 ATCAAACCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 2486
Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571
||| || | | ||||| | | ||| |||||||| || || || | ||| || |
Sbjct 2487 AATGACAATGACTCCAGTGTTACCAGTAAAACCATCCATTTCAGTAAGAAGTTGGTTCAG 2546
Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGC 11631
||| || ||||| ||||||||| || | ||||| | | |||| | || || ||
Sbjct 2547 TGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTTTGCCTCCCAACTGC 2606
Query 11632 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 11691
|||||| |||||||| || | || || || ||||| || | | || | ||
Sbjct 2607 ATCAATTTCATCAATAAAAATTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTC 2666
Query 11692 GCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG 11751
| ||| || || |||||||||||||||||||| | || | || | |||||
Sbjct 2667 CCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAATGAACTCTGAGCCAGAGAGAGA 2726
Query 11752 GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACC 11811
| |||||| || || ||| || || || || || || | ||||| || || ||
Sbjct 2727 AAAGAATGGCACCCCTGCTTCTCCGGCAATCGCCTTAGCTAGCAATGTCTTCCCTGTCCC 2786
Query 11812 TGG 11814
|||
Sbjct 2787 TGG 2789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627532212134400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |