Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq63299 107 2e-18 seq7277 104 3e-17 seq11918 93.3 5e-14 seq6171 89.7 6e-13 seq34693 82.4 1e-10 >seq63299 Length=13169 Score = 107 bits (118), Expect = 2e-18 Identities = 278/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || ||||||| ||| | || ||||| | || || Sbjct 6908 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 6849 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || ||| || | || ||||| || ||||||||| || | | Sbjct 6848 CCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCT--CCTC 6791 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 6790 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAAG 6731 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || ||||| || || | ||| || |||||||||| Sbjct 6730 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCAACACCAACAA 6671 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| || || | || | | || | || || ||||| ||| | |||||| || Sbjct 6670 ACATCTCAACGAATTCTGAGCCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 6612 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || | ||| || || ||||| || ||| | ||||| | ||| Sbjct 6611 ATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 6552 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || || | || | ||||||| |||| ||| | ||| || || | ||| Sbjct 6551 GGAATACGAGCGCCCACTGCAGTAAATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 6493 >seq7277 Length=17119 Score = 104 bits (114), Expect = 3e-17 Identities = 194/285 (68%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || ||||||||||||||| | Sbjct 14153 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 14098 Query 11600 ATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||||||| |||| | || | ||||| ||||||||||||||||| || ||| Sbjct 14097 --ACCACCAAGTCCTGCACCTCTCTGTCTTCCCACAGCATCAATCTCATCAATAAACACA 14040 Query 11654 ATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709 ||||| || || |||| || | ||||| | ||| | ||| || || || Sbjct 14039 ATACAAGGCGCTTTAGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCC 13984 Query 11710 CACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGA 11769 |||||| ||||||| ||| ||||| | || || | || || ||||| ||| | Sbjct 13983 CACACCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGC 13924 Query 11770 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||||| || | |||| || | |||||||| || |||||||| Sbjct 13923 CTCACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 13879 Score = 104 bits (114), Expect = 3e-17 Identities = 193/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || || |||||||||||| | | Sbjct 15464 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA--C 15407 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | || |||| | ||| | ||||| ||||||||||||||||| || || |||| Sbjct 15406 CTCCAAGTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACTATAC 15347 Query 11658 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 | || || |||| || | ||||| | ||| | ||| || || |||||| Sbjct 15346 AAGGCGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACA 15291 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || ||||||| ||| ||||| | || || | || || ||||| ||| | |||| Sbjct 15290 CCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGTACACCAGCTTCA 15231 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | |||| || | |||||||| || |||||||| Sbjct 15230 CCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 15190 >seq11918 Length=25867 Score = 93.3 bits (102), Expect = 5e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || |||||||| ||||| ||||| | ||| ||| ||||| | ||| Sbjct 16586 TGAGGCCTTGGAGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 16645 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 16646 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 16705 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 || | ||| | ||||| ||||| |||| | | | || | || | || | || || Sbjct 16706 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAATCTTTCCCT-GAATCTTTAAGAGGTA 16764 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 16765 AGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 16809 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||||| |||| || || ||||| || | |||||||||||| || ||| | |||| Sbjct 15237 ACATATCTTGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTTGTG 15296 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| | ||| |||||||| ||||| ||| ||| || || || | ||||| ||||| Sbjct 15297 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 15356 Query 111341 CTCTTCTTGTTGCACGCATCCT 111362 || || | ||||| | ||||| Sbjct 15357 CTTTTTCTATTGCAAGAATCCT 15378 >seq6171 Length=36435 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| ||||| | |||||||||||| || || Sbjct 4962 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 4903 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||||| || ||||||||| | || | ||||| ||| |||||| || Sbjct 4902 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 4843 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCG-AAGGAGCGAGACTTTGCATCAAA 122837 || || ||||| ||||| || | | ||| || ||| ||| || || |||| | Sbjct 4842 CCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAAC----CATCGAT 4787 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876 ||| | ||||||||||||||||| |||| ||| || Sbjct 4786 CCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGG 4748 >seq34693 Length=17230 Score = 82.4 bits (90), Expect = 1e-10 Identities = 195/295 (66%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| | || || | ||| | || | |||||| || || | |||||| || || Sbjct 1959 ATCAAACCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 2018 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | | ||||| | | ||| |||||||| || || || | ||| || | Sbjct 2019 AATGACAATGACTCCAGTGTTACCAGTAAAACCATCCATTTCAGTAAGAAGTTGGTTCAG 2078 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGC 11631 ||| || ||||| ||||||||| || | ||||| | | |||| | || || || Sbjct 2079 TGTCTGCTCTCTTTCATCATTTCCTCCTCCAATACCAGTTCCTCTTTGCCTCCCAACTGC 2138 Query 11632 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 11691 |||||| |||||||| || | || || || ||||| || | | || | || Sbjct 2139 ATCAATTTCATCAATAAAAATTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTC 2198 Query 11692 GCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 | ||| || || |||||||||||||||||||| | || | || | ||||| Sbjct 2199 CCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAATGAACTCTGAGCCAGAG 2253 Score = 82.4 bits (90), Expect = 1e-10 Identities = 236/363 (65%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| | || || | ||| | || | |||||| || || | |||||| || || Sbjct 2427 ATCAAACCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 2486 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | | ||||| | | ||| |||||||| || || || | ||| || | Sbjct 2487 AATGACAATGACTCCAGTGTTACCAGTAAAACCATCCATTTCAGTAAGAAGTTGGTTCAG 2546 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGC 11631 ||| || ||||| ||||||||| || | ||||| | | |||| | || || || Sbjct 2547 TGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTTTGCCTCCCAACTGC 2606 Query 11632 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 11691 |||||| |||||||| || | || || || ||||| || | | || | || Sbjct 2607 ATCAATTTCATCAATAAAAATTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTC 2666 Query 11692 GCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG 11751 | ||| || || |||||||||||||||||||| | || | || | ||||| Sbjct 2667 CCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAATGAACTCTGAGCCAGAGAGAGA 2726 Query 11752 GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACC 11811 | |||||| || || ||| || || || || || || | ||||| || || || Sbjct 2727 AAAGAATGGCACCCCTGCTTCTCCGGCAATCGCCTTAGCTAGCAATGTCTTCCCTGTCCC 2786 Query 11812 TGG 11814 ||| Sbjct 2787 TGG 2789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627532212134400