Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq30144 100 4e-16 seq7277 87.8 2e-12 >seq30144 Length=14732 Score = 100 bits (110), Expect = 4e-16 Identities = 195/286 (68%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983 ||||||||| ||| | || || | || |||||| ||| |||||||||||||||||||| Sbjct 1966 GAATTACCGCGAAGCGTACGGGATATTCGCGTGCAATGGGATTCTCTTCAACCACGAGTC 2025 Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC------GATGGTATCAAACA 12037 || ||||| || | |||||||||| | |||||| ||| | || | | | | Sbjct 2026 TCCTCGTCGGGGTGAGAATTTCGTGACGAGGAAGATAACCCGGGCTGTAGGGAGGATAAA 2085 Query 12038 AATCGTGGCGGGT-GAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACT 12096 ||||| || | |||| || | || |||||||| | | || ||||||| Sbjct 2086 AATCG----GGTTACAGAGCAAGGTGTTT---TTGGGGAATTTACAGGCGTCAAGGGACT 2138 Query 12097 GGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGG 12156 |||| ||| |||||||| ||||| |||||| | | || || ||||| | | | Sbjct 2139 GGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATGCTGCAGCAAGAGAAACCAG 2198 Query 12157 ACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTT 12202 |||| || || || || |||| ||| ||||| | || |||||| Sbjct 2199 ACGACTACGTTGTGGCAACGGAGGATTCACACACTGTAGAGGAGTT 2244 >seq7277 Length=17119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/282 (67%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| ||||||||||| ||||| || || || || | |||||||| || | Sbjct 15464 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA--C 15407 Query 14213 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | | || |||| | ||| | || || || ||||| ||||| || || || |||| Sbjct 15406 CTCCAAGTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACTATAC 15347 Query 14271 ATGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 | || || |||| | | ||||| | ||| | ||||| || || ||| Sbjct 15346 AAGGCGCTTTCGATTTCGCCTTC----TCAAACAAATCCCTAACTCTAGAAGCTCCCACA 15291 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCA 14386 |||||||||| ||| ||||| | | || | ||| || || || || || |||| Sbjct 15290 CCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGTACACCAGCTTCA 15231 Query 14387 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || || | |||| || | ||||||||||| || |||||| Sbjct 15230 CCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGGT 15189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617943049267840