Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq63299 134 2e-26 seq7277 113 5e-20 >seq63299 Length=13169 Score = 134 bits (148), Expect = 2e-26 Identities = 307/450 (68%), Gaps = 18/450 (4%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 6939 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 6880 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 6879 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 6822 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 6821 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 6764 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 6763 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 6705 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| || || | || | | ||| Sbjct 6704 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAGCCTGAA 6645 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 6644 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 6586 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG-CCACTTCCAAAGT 9938 ||||| || ||| | || || ||||| |||||| ||| ||||| | ||| Sbjct 6585 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCGCCCACTGC---AGT 6529 Query 9939 --ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||||||||| ||| | ||| || || Sbjct 6528 AAATCTCTCAGGTTTCTTCAAAAATTCTAC 6499 >seq7277 Length=17119 Score = 113 bits (124), Expect = 5e-20 Identities = 198/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || ||||| || || |||||||| || |||| |||||||| | | Sbjct 15464 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA--C 15407 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || |||| | ||| ||||||| ||||||||||||||||| || || || | Sbjct 15406 CTCCAAGTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACTATAC 15347 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 | || ||||| || || ||||| | ||||| || || || | || |||||| Sbjct 15346 AAGG--CGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACA 15291 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || ||||||| ||| ||||| | || || | ||| || || || ||| || |||| Sbjct 15290 CCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGTACACCAGCTTCA 15231 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || | |||| || | ||| ||||| || |||||||| Sbjct 15230 CCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 15190 Score = 102 bits (112), Expect = 9e-17 Identities = 197/287 (69%), Gaps = 24/287 (8%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || |||||||| || |||||||| || || | |||||||| | Sbjct 14153 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 14098 Query 9674 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||||||| |||| | || ||||||| ||||||||||||||||| || || Sbjct 14097 --ACCACCAAGTCCTGCACCTCTCTGTCTTCCCACAGCATCAATCTCATCAATAAACACA 14040 Query 9728 ATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCG 9781 || || || || |||||| | ||||| | ||||| || || || | || Sbjct 14039 ATACAAGGCGCTTTAGATTTCGCCTTC----TCAAACAAATCCC-TA-ACTCTAGAAGCT 13986 Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 9841 |||||||| ||||||| ||| ||||| | || || | ||| || || || ||| | Sbjct 13985 CCCACACCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCA 13926 Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | ||||| || | |||| || | ||| ||||| || |||||||| Sbjct 13925 GCCTCACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 13879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582796641055360