Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq63454 98.7 1e-15 >seq63454 Length=19053 Score = 98.7 bits (108), Expect = 1e-15 Identities = 272/409 (67%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 166101 TCGGTACTGGACCGGCCGGGACCGGTAAGACGCTCCTGGC-ATG-CAACGCCGGTTCTCA 166158 |||| | || || ||||| ||||| |||||| ||| || ||| | | | | || | | Sbjct 7173 TCGGCATCGGCCCCGCCGGTACCGGCAAGACGTACCTCGCGATGGCGAAGGCCGTGC--A 7230 Query 166159 CGCACTGGCGACGCGCAAGGTTGAACGTCTGATCCTGACGCGACCGGCCGT-GAGCGTCG 166217 || ||| | |||| |||| || | |||||||| || || || || ||| | || Sbjct 7231 GGCGCTGCAGCGGCGCGAGGTGAGCCGCATCATCCTGACCCGCCCCGCGGTCGAG-GCCG 7289 Query 166218 AGGAGCAGCACGGGTTCCTTCCCGGCAGTCTCGAGCAGAAGATGGAGCCGTGGACTCGAC 166277 |||| || ||||||||| ||||||| || | | ||||| || |||| || | Sbjct 7290 GCGAGCGGCTCGGGTTCCTGCCCGGCACGCTGACGGACAAGATCGACCCGTACCTCCGCC 7349 Query 166278 CCATGTTCGACGCCCTGTACCGGTACATGAGCCCTAAGAAGGTTCGGGATCTCATGGAAA 166337 | | | |||||| || || | ||| ||| || ||| | | | ||| ||| Sbjct 7350 CGCTCTACGACGCGCTCAACGAGATGATGGACCCCGAGCTGGTCCCGAAGCTCCTGGCCG 7409 Query 166338 AT--CACGTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAACGC 166395 |||| ||||| || || ||||||||||||||||| |||||| | || || | Sbjct 7410 CCGGCACGG--TCGAGGTCGCCCCGCTGGCGTACATGCGCGGCCGGACGCTGAACGACTC 7467 Query 166396 CTGGATTATCGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCTGAC 166455 | | || || ||| ||||||| | ||||| | |||||||||||| | ||||| Sbjct 7468 GTTCGTCGTCCTCGACGAGGCGCAGAACACCACGCCCGAGCAGATGAAGATGTTCCTGAC 7527 Query 166456 CCGGATCGGGGAAGGTTCGAAGATGATCGTCGCGGGTGACACGGCCCAG 166504 || |||| || ||||||||| ||||| |||| |||| ||||| Sbjct 7528 GCGCCTCGGCTTCGGCTCGAAGATGGTCGTCACGGGGGACATCACCCAG 7576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548088283964160