Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6171 134 2e-26 seq12012 86.0 7e-12 seq4257 82.4 8e-11 seq986 82.4 8e-11 seq387 82.4 8e-11 >seq6171 Length=36435 Score = 134 bits (148), Expect = 2e-26 Identities = 293/424 (69%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | ||||| ||||| || || ||||| || || | | |||||||| | || Sbjct 4950 TGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCC 4891 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 || || ||||||||||| || | ||||||| || |||||||| || ||||| ||||| Sbjct 4890 CGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTTCAACACAA 4831 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGTCTGAGCC 74939 ||||| || || | ||| | |||||| | | |||||| || |||||| | ||| Sbjct 4830 GCAAAAGCCACCAAGCGCTCCGCGAAAGTT---TCGGAACCATCGATCCAACGAAGGGCC 4774 Query 74940 CATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGAAGAGGCTTGC-CT 74997 |||| || ||| ||| | | | ||||| || ||||| || |||| | |||| || Sbjct 4773 CATTTCGC-CTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACA-ATTTGCTCT 4716 Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057 | || || | |||||| | | | || | || | |||| |||| ||||| || Sbjct 4715 TTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGAATGGATAT 4656 Query 75058 ACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT- 75115 ||| || ||| ||| || | ||||||| |||||||| |||| ||| || || || Sbjct 4655 TCTCAATG-GCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGACGTCTTTC 4597 Query 75116 -TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCA 75174 || || ||| || ||| ||||| | ||||||||||| |||||||| ||||| || | Sbjct 4596 ATG-AACCTTCCTG-CGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGCAA 4539 Query 75175 GTAC 75178 | || Sbjct 4538 GCAC 4535 >seq12012 Length=25065 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 19172 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19231 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 19232 TGAGCTATGAAAGC 19245 >seq4257 Length=109180 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 10/115 (9%) Strand=Plus/Plus Query 79696 GCAAAAGGGGAACTCTGACCTGGCGGAATCGAACCACCGACCTAAAGATGACTGAACATC 79755 ||||||| || || |||||| |||| |||||||| |||||||| ||| |||||| Sbjct 62617 GCAAAAGAATAAATCCGACCTGCCGGATTCGAACCAGCGACCTAAGGATATCTGAAC--- 62673 Query 79756 CGGATTAGAGCACACTCGCTCTACAGTCTTTCGCTCTACCAATTGAGCTAAGGTC 79810 || ||| | | |||| |||||| | ||||||||||| |||||||||||| Sbjct 62674 -GGTTTACACCCCACT------ACAGTCCTCCGCTCTACCAACTGAGCTAAGGTC 62721 >seq986 Length=74774 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 54613 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 54672 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 54673 TGAGCTATGAAAGCA 54687 >seq387 Length=64468 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 49734 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 49675 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| || |||| Sbjct 49674 TGAGCTATGAGAGCA 49660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546780525507200